Novel biomarkers of nasopharyngeal carcinoma metastasis risk identified by reverse phase protein array based tumor profiling with consideration of plasma Epstein–Barr virus DNA load

• Published in: Proteomics. Clinical applications 2017-05, Vol.11 (5-6), p.n/a
• Main Authors: Xu, Tao, Su, Bojin, Huang, Peiyu, Wei, Weihong, Deng, Yanming, Sehgal, Vasudha, Wang, Donghui, Jiang, Jun, Zhang, Guoyi, Li, Anfei, Yang, Huiling, Claret, Francois X.
• Format: Article
• Language: English
• Subjects: Apoptosis; Bioinformatics; Biomarkers; Biomarkers, Tumor - metabolism; Carcinoma - genetics; Carcinoma - metabolism; Carcinoma - pathology; Carcinoma - virology; Cell cycle; Deoxyribonucleic acid; DNA; DNA, Viral - blood; Epstein-Barr virus; Epstein–Barr virus (EBV); Experimental design; Failure analysis; Female; Gene expression; Gene Expression Profiling; Herpesvirus 4, Human - genetics; Herpesvirus 4, Human - physiology; Heterogeneity; Humans; Male; Mesenchyme; Metastases; Metastasis; Middle Aged; Multivariate analysis; Nasopharyngeal Carcinoma; Nasopharyngeal Neoplasms - genetics; Nasopharyngeal Neoplasms - metabolism; Nasopharyngeal Neoplasms - pathology; Nasopharyngeal Neoplasms - virology; Neoplasm Metastasis; Patients; Plasmas (physics); Protein Array Analysis; Protein arrays; Protein expression; Proteins; Proteomics; Reverse phase protein array (RPPA); Risk; Risk Assessment; Signal transduction; Throat cancer; Tumors; Viruses
• ISSN: 1862-8346; 1862-8354
• DOI: 10.1002/prca.201600090

Purpose In patients with Epstein–Barr virus (EBV) associated nasopharyngeal carcinoma (NPC), intertumor heterogeneity causes interpatient heterogeneity in the risk of distant metastasis. We aimed to identify novel biomarkers of metastasis risk using reverse phase protein array (RPPA) profiling of NPC patients at risk for metastasis and considering plasma EBV DNA load. Experimental design A total of 98 patients with NPC with and without metastasis after treatment, matched with respect to clinical parameters, are enrolled. Total protein expression is measured by RPPA, and protein functions are analyzed by pathway bioinformatics. Results The RPPA analysis revealed a profile of 70 proteins that are differentially expressed in metastatic and nonmetastatic tumors. Plasma EBV DNA load after treatment correlated with protein expression level better than plasma EBV DNA load before treatment did. The biomarkers of NPC metastasis identified by proteomics regulate signaling pathways involved in cell cycle progression, apoptosis, and epithelial‐mesenchymal transition. The authors identified 26 biomarkers associated with 5‐year distant failure‐free survival in univariate analysis; five biomarkers remained significant in multivariate analysis. Conclusions and clinical relevance A comprehensive RPPA profiling study is warranted to identify novel metastasis‐related biomarkers and further examine the activation state of signaling proteins to improve estimation of metastasis risk for patients with EBV‐associated NPC.