Multigene Assessment of Biodiversity of Diatom(Bacillariophyceae) Assemblages from the Littoral Zone of the Bohai and Yellow Seas in Yantai Region of Northeast China with some Remarks on Ubiquitous Taxa

Diatoms are important contributors to the benthic micro-eukaryote flora. This manuscript lays the foundation for future meta-genomic and environmental sequencing projects off coastal China by curating diatom DNA sequences from the Yantai region of the Bohai and Yellow Seas (Northeast China). These s...

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Published in:Journal of coastal research 2016-01, Vol.SI (74), p.166-166
Main Authors: Witkowski, Andrzej, Li, Chunlian, Zglobicka, Izabela, Yu, Shu-xian, Ashworth, Matt, Dabek, Przemyslaw, Qin, Song, Tang, Cheng, Krzywda, Marta, Ruppel, Manfred, Theriot, Edward C, Jansen, Robert K, Car, Ana, Plocinski, Tomasz, Wang, Yin-chu, Sabir, Jamal S M, Daniszewska-Kowalczyk, Genowefa, Kierzek, Agnieszka, Hajrah, Nahid H
Format: Article
Language:English
Subjects:
Adriatic Sea
Amphora
Assessments
Bacillariophyceae
Biodiversity
Caloneis
Cloning
Coasts
Deoxyribonucleic acid
Diploneis
DNA
Flora
Flow velocity
Gene sequencing
Islands
Littoral environments
Littoral zone
Metadata
Microorganisms
Microscopy
Morphology
Navicula
Nitzschia
Plankton
Pleurosigma
Ribonucleic acids
Salinity
Scanning electron microscopy
Science
Seas
Studies
Surirella
Taxa
Tryblionella
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container_end_page 166
container_issue 74
container_start_page 166
container_title Journal of coastal research
container_volume SI
creator Witkowski, Andrzej
Li, Chunlian
Zglobicka, Izabela
Yu, Shu-xian
Ashworth, Matt
Dabek, Przemyslaw
Qin, Song
Tang, Cheng
Krzywda, Marta
Ruppel, Manfred
Theriot, Edward C
Jansen, Robert K
Car, Ana
Plocinski, Tomasz
Wang, Yin-chu
Sabir, Jamal S M
Daniszewska-Kowalczyk, Genowefa
Kierzek, Agnieszka
Hajrah, Nahid H
description Diatoms are important contributors to the benthic micro-eukaryote flora. This manuscript lays the foundation for future meta-genomic and environmental sequencing projects off coastal China by curating diatom DNA sequences from the Yantai region of the Bohai and Yellow Seas (Northeast China). These studies are based on cultures established from samples collected in different seasons from marine littoral and supra-littoral zones in 2013 and 2014. Thirty-six diatom strains were cultured successfully and identification of these clones was determined by light and scanning electron microscopy(LM and SEM) and DNA sequencing of the nuclear-encoded small subunit ribosomal RNA (SSU)and chloroplast-encoded rbcL and psbC genes. The strains primarily represent raphid pennate genera, such as Amphora, Amphora (Oxyamphora), Caloneis, Diploneis, Halamphora, Navicula, Nitzschia, Parlibellus, Pleurosigma, Surirella and Tryblionella. The authors also compared the molecular and morphological identities of several seemingly ubiquitous marine littoral taxa in the genera Amphora and Nitzschia from the Indian Ocean and Atlantic Ocean, the Red Sea and Adriatic Sea to their Yellow Sea counterparts.
doi_str_mv 10.2112/SI74-016
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subjects Adriatic Sea
Amphora
Assessments
Bacillariophyceae
Biodiversity
Caloneis
Cloning
Coasts
Deoxyribonucleic acid
Diploneis
DNA
Flora
Flow velocity
Gene sequencing
Islands
Littoral environments
Littoral zone
Metadata
Microorganisms
Microscopy
Morphology
Navicula
Nitzschia
Plankton
Pleurosigma
Ribonucleic acids
Salinity
Scanning electron microscopy
Science
Seas
Studies
Surirella
Taxa
Tryblionella
title Multigene Assessment of Biodiversity of Diatom(Bacillariophyceae) Assemblages from the Littoral Zone of the Bohai and Yellow Seas in Yantai Region of Northeast China with some Remarks on Ubiquitous Taxa
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