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Improved individualized prediction of schizophrenia in subjects at familial high risk, based on neuroanatomical data, schizotypal and neurocognitive features
Abstract To date, there are no reliable markers for predicting onset of schizophrenia in individuals at high risk (HR). Substantial promise is, however, shown by a variety of pattern classification approaches to neuroimaging data. Here, we examined the predictive accuracy of support vector machine (...
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Published in: | Schizophrenia research 2017-03, Vol.181, p.6-12 |
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description | Abstract To date, there are no reliable markers for predicting onset of schizophrenia in individuals at high risk (HR). Substantial promise is, however, shown by a variety of pattern classification approaches to neuroimaging data. Here, we examined the predictive accuracy of support vector machine (SVM) in later diagnosing schizophrenia, at a single-subject level, using a cohort of HR individuals drawn from multiply affected families and a combination of neuroanatomical, schizotypal and neurocognitive variables. Baseline structural magnetic resonance imaging (MRI), schizotypal and neurocognitive data from 17 HR subjects, who subsequently developed schizophrenia and a matched group of 17 HR subjects who did not make the transition, yet had psychotic symptoms, were included in the analysis. We employed recursive feature elimination (RFE), in a nested cross-validation scheme to identify the most significant predictors of disease transition and enhance diagnostic performance. Classification accuracy was 94% when a self-completed measure of schizotypy, a declarative memory test and structural MRI data were combined into a single learning algorithm; higher than when either quantitative measure was used alone. The discriminative neuroanatomical pattern involved gray matter volume differences in frontal, orbito-frontal and occipital lobe regions bilaterally as well as parts of the superior, medial temporal lobe and cerebellar regions. Our findings suggest that an early SVM-based prediction of schizophrenia is possible and can be improved by combining schizotypal and neurocognitive features with neuroanatomical variables. However, our predictive model needs to be tested by classifying a new, independent HR cohort in order to estimate its validity. |
doi_str_mv | 10.1016/j.schres.2016.08.027 |
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Substantial promise is, however, shown by a variety of pattern classification approaches to neuroimaging data. Here, we examined the predictive accuracy of support vector machine (SVM) in later diagnosing schizophrenia, at a single-subject level, using a cohort of HR individuals drawn from multiply affected families and a combination of neuroanatomical, schizotypal and neurocognitive variables. Baseline structural magnetic resonance imaging (MRI), schizotypal and neurocognitive data from 17 HR subjects, who subsequently developed schizophrenia and a matched group of 17 HR subjects who did not make the transition, yet had psychotic symptoms, were included in the analysis. We employed recursive feature elimination (RFE), in a nested cross-validation scheme to identify the most significant predictors of disease transition and enhance diagnostic performance. 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However, our predictive model needs to be tested by classifying a new, independent HR cohort in order to estimate its validity.</description><identifier>ISSN: 0920-9964</identifier><identifier>EISSN: 1573-2509</identifier><identifier>DOI: 10.1016/j.schres.2016.08.027</identifier><identifier>PMID: 27613509</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Adolescent ; Adult ; Brain - diagnostic imaging ; Cognition ; Diagnosis, Computer-Assisted ; Familial HR ; Family ; Feasibility Studies ; Female ; Follow-Up Studies ; Genetic Predisposition to Disease ; Humans ; Longitudinal Studies ; Machine learning ; Magnetic Resonance Imaging ; Male ; Memory ; MRI ; Multivariate Analysis ; Neuropsychological Tests ; Prediction ; Psychiatry ; Recursive feature elimination ; Schizophrenia ; Schizophrenia - classification ; Schizophrenia - diagnosis ; Schizophrenia - genetics ; Schizophrenic Psychology ; Schizotypal Personality Disorder - psychology ; Support Vector Machine ; Young Adult</subject><ispartof>Schizophrenia research, 2017-03, Vol.181, p.6-12</ispartof><rights>Elsevier B.V.</rights><rights>2016 Elsevier B.V.</rights><rights>Copyright © 2016 Elsevier B.V. All rights reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c529t-104409b2b395c46e972a500135a2578c1f08e1e44d6edb1e1260774f2d8060893</citedby><cites>FETCH-LOGICAL-c529t-104409b2b395c46e972a500135a2578c1f08e1e44d6edb1e1260774f2d8060893</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27613509$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zarogianni, Eleni</creatorcontrib><creatorcontrib>Storkey, Amos J</creatorcontrib><creatorcontrib>Johnstone, Eve C</creatorcontrib><creatorcontrib>Owens, David G.C</creatorcontrib><creatorcontrib>Lawrie, Stephen M</creatorcontrib><title>Improved individualized prediction of schizophrenia in subjects at familial high risk, based on neuroanatomical data, schizotypal and neurocognitive features</title><title>Schizophrenia research</title><addtitle>Schizophr Res</addtitle><description>Abstract To date, there are no reliable markers for predicting onset of schizophrenia in individuals at high risk (HR). Substantial promise is, however, shown by a variety of pattern classification approaches to neuroimaging data. Here, we examined the predictive accuracy of support vector machine (SVM) in later diagnosing schizophrenia, at a single-subject level, using a cohort of HR individuals drawn from multiply affected families and a combination of neuroanatomical, schizotypal and neurocognitive variables. Baseline structural magnetic resonance imaging (MRI), schizotypal and neurocognitive data from 17 HR subjects, who subsequently developed schizophrenia and a matched group of 17 HR subjects who did not make the transition, yet had psychotic symptoms, were included in the analysis. We employed recursive feature elimination (RFE), in a nested cross-validation scheme to identify the most significant predictors of disease transition and enhance diagnostic performance. Classification accuracy was 94% when a self-completed measure of schizotypy, a declarative memory test and structural MRI data were combined into a single learning algorithm; higher than when either quantitative measure was used alone. The discriminative neuroanatomical pattern involved gray matter volume differences in frontal, orbito-frontal and occipital lobe regions bilaterally as well as parts of the superior, medial temporal lobe and cerebellar regions. Our findings suggest that an early SVM-based prediction of schizophrenia is possible and can be improved by combining schizotypal and neurocognitive features with neuroanatomical variables. However, our predictive model needs to be tested by classifying a new, independent HR cohort in order to estimate its validity.</description><subject>Adolescent</subject><subject>Adult</subject><subject>Brain - diagnostic imaging</subject><subject>Cognition</subject><subject>Diagnosis, Computer-Assisted</subject><subject>Familial HR</subject><subject>Family</subject><subject>Feasibility Studies</subject><subject>Female</subject><subject>Follow-Up Studies</subject><subject>Genetic Predisposition to Disease</subject><subject>Humans</subject><subject>Longitudinal Studies</subject><subject>Machine learning</subject><subject>Magnetic Resonance Imaging</subject><subject>Male</subject><subject>Memory</subject><subject>MRI</subject><subject>Multivariate Analysis</subject><subject>Neuropsychological Tests</subject><subject>Prediction</subject><subject>Psychiatry</subject><subject>Recursive feature elimination</subject><subject>Schizophrenia</subject><subject>Schizophrenia - classification</subject><subject>Schizophrenia - diagnosis</subject><subject>Schizophrenia - genetics</subject><subject>Schizophrenic Psychology</subject><subject>Schizotypal Personality Disorder - psychology</subject><subject>Support Vector Machine</subject><subject>Young Adult</subject><issn>0920-9964</issn><issn>1573-2509</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><recordid>eNqFks9u1DAQxiMEokvhDRDKkUOzjJ0_Ti5IqAJaqRIH4Gw59qQ728Re7GSl7bvwrsxqtxy4cLLG-s03mu-bLHsrYC1ANB-262Q3EdNacrWGdg1SPctWolZlIWvonmcr6CQUXddUF9mrlLYAIGpQL7MLqRpRMrPKft9Ouxj26HLyjvbkFjPSI5e7iI7sTMHnYch5FD2GHc_zZBjN09Jv0c4pN3M-mIlGMmO-oftNHik9XOW9SSzCzR6XGIw3c5jIMuPMbK7OevNhxz_GuxNlw72nmfaYD2jmhXd7nb0YzJjwzfm9zH5--fzj-qa4-_b19vrTXWFr2c2FgKqCrpd92dW2arBT0tS8bFkbWavWigFaFFhVrkHXCxSyAaWqQboWGmi78jJ7f9JlL34tmGY9UbI4jsZjWJIWbd2pslStZLQ6oTaGlCIOehdpMvGgBehjMHqrT8HoYzAaWs3BcNu784Sln9D9bXpKgoGPJwB5zz1hZBVCbzmFyEZrF-h_E_4VsCP5o-cPeMC0DUv07KEWOkkN-vvxOI63IZoSSqVk-QeZsrjr</recordid><startdate>20170301</startdate><enddate>20170301</enddate><creator>Zarogianni, Eleni</creator><creator>Storkey, Amos J</creator><creator>Johnstone, Eve C</creator><creator>Owens, David G.C</creator><creator>Lawrie, Stephen M</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20170301</creationdate><title>Improved individualized prediction of schizophrenia in subjects at familial high risk, based on neuroanatomical data, schizotypal and neurocognitive features</title><author>Zarogianni, Eleni ; Storkey, Amos J ; Johnstone, Eve C ; Owens, David G.C ; Lawrie, Stephen M</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c529t-104409b2b395c46e972a500135a2578c1f08e1e44d6edb1e1260774f2d8060893</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Adolescent</topic><topic>Adult</topic><topic>Brain - diagnostic imaging</topic><topic>Cognition</topic><topic>Diagnosis, Computer-Assisted</topic><topic>Familial HR</topic><topic>Family</topic><topic>Feasibility Studies</topic><topic>Female</topic><topic>Follow-Up Studies</topic><topic>Genetic Predisposition to Disease</topic><topic>Humans</topic><topic>Longitudinal Studies</topic><topic>Machine learning</topic><topic>Magnetic Resonance Imaging</topic><topic>Male</topic><topic>Memory</topic><topic>MRI</topic><topic>Multivariate Analysis</topic><topic>Neuropsychological Tests</topic><topic>Prediction</topic><topic>Psychiatry</topic><topic>Recursive feature elimination</topic><topic>Schizophrenia</topic><topic>Schizophrenia - classification</topic><topic>Schizophrenia - diagnosis</topic><topic>Schizophrenia - genetics</topic><topic>Schizophrenic Psychology</topic><topic>Schizotypal Personality Disorder - psychology</topic><topic>Support Vector Machine</topic><topic>Young Adult</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zarogianni, Eleni</creatorcontrib><creatorcontrib>Storkey, Amos J</creatorcontrib><creatorcontrib>Johnstone, Eve C</creatorcontrib><creatorcontrib>Owens, David G.C</creatorcontrib><creatorcontrib>Lawrie, Stephen M</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Schizophrenia research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zarogianni, Eleni</au><au>Storkey, Amos J</au><au>Johnstone, Eve C</au><au>Owens, David G.C</au><au>Lawrie, Stephen M</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Improved individualized prediction of schizophrenia in subjects at familial high risk, based on neuroanatomical data, schizotypal and neurocognitive features</atitle><jtitle>Schizophrenia research</jtitle><addtitle>Schizophr Res</addtitle><date>2017-03-01</date><risdate>2017</risdate><volume>181</volume><spage>6</spage><epage>12</epage><pages>6-12</pages><issn>0920-9964</issn><eissn>1573-2509</eissn><abstract>Abstract To date, there are no reliable markers for predicting onset of schizophrenia in individuals at high risk (HR). Substantial promise is, however, shown by a variety of pattern classification approaches to neuroimaging data. Here, we examined the predictive accuracy of support vector machine (SVM) in later diagnosing schizophrenia, at a single-subject level, using a cohort of HR individuals drawn from multiply affected families and a combination of neuroanatomical, schizotypal and neurocognitive variables. Baseline structural magnetic resonance imaging (MRI), schizotypal and neurocognitive data from 17 HR subjects, who subsequently developed schizophrenia and a matched group of 17 HR subjects who did not make the transition, yet had psychotic symptoms, were included in the analysis. We employed recursive feature elimination (RFE), in a nested cross-validation scheme to identify the most significant predictors of disease transition and enhance diagnostic performance. Classification accuracy was 94% when a self-completed measure of schizotypy, a declarative memory test and structural MRI data were combined into a single learning algorithm; higher than when either quantitative measure was used alone. The discriminative neuroanatomical pattern involved gray matter volume differences in frontal, orbito-frontal and occipital lobe regions bilaterally as well as parts of the superior, medial temporal lobe and cerebellar regions. Our findings suggest that an early SVM-based prediction of schizophrenia is possible and can be improved by combining schizotypal and neurocognitive features with neuroanatomical variables. However, our predictive model needs to be tested by classifying a new, independent HR cohort in order to estimate its validity.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>27613509</pmid><doi>10.1016/j.schres.2016.08.027</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Adolescent Adult Brain - diagnostic imaging Cognition Diagnosis, Computer-Assisted Familial HR Family Feasibility Studies Female Follow-Up Studies Genetic Predisposition to Disease Humans Longitudinal Studies Machine learning Magnetic Resonance Imaging Male Memory MRI Multivariate Analysis Neuropsychological Tests Prediction Psychiatry Recursive feature elimination Schizophrenia Schizophrenia - classification Schizophrenia - diagnosis Schizophrenia - genetics Schizophrenic Psychology Schizotypal Personality Disorder - psychology Support Vector Machine Young Adult |
title | Improved individualized prediction of schizophrenia in subjects at familial high risk, based on neuroanatomical data, schizotypal and neurocognitive features |
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