Fluorescent trimethyl-substituted naphthyridine as a label-free signal reporter for one-step and highly sensitive fluorescent detection of DNA in serum samples

• Published in: Biosensors & bioelectronics 2017-01, Vol.87, p.984-990
• Main Authors: Wang, Jiamian, Wang, Xiuyun, Wu, Shuo, Che, Ruping, Luo, Pinchen, Meng, Changgong
• Format: Article
• Language: English
• Subjects: ATMND; Biosensing Techniques - methods; C-C mismatch; Carbon-carbon composites; Cascades; Deoxyribonucleic acid; Detection; Digestion; DNA - analysis; DNA - blood; Exo III assisted cascade target recycling amplification; Exodeoxyribonucleases - chemistry; Fluorescence; Fluorescent DNA detection; Fluorescent Dyes - chemistry; Humans; Label-free; Limit of Detection; Naphthyridines - chemistry; Point-of-Care Systems; Serums; Spectrometry, Fluorescence - methods; Strategy
• ISSN: 0956-5663; 1873-4235
• DOI: 10.1016/j.bios.2016.09.064

A facile label-free sensing method is developed for the one-step and highly sensitive fluorescent detection of DNA, which couples the specific C-C mismatch bonding and fluorescent quenching property of a trimethyl-substituted naphthyridine dye (ATMND) with the exonuclease III (Exo III) assisted cascade target recycling amplification strategy. In the absence of target DNA, the DNA hairpin probe with a C-C mismatch in the stem and more than 4 bases overhung at the 3′ terminus could entrap and quench the fluorescence of ATMND and resist the digestion of Exo III, thus showing a low fluorescence background. In the presence of the target, however, the hybridization event between the two protruding segments and the target triggers the digestion reaction of Exo III, recycles the initial target, and simultaneously releases both the secondary target analogue and the ATMND caged in the stem. The released initial and secondary targets take part in another cycle of digestion, thus leading to the release of a huge amount of free ATMND for signal transducing. Based on the fluorescence recovery, the as-proposed label-free fluorescent sensing strategy shows very good analytical performances towards DNA detection, such as a wide linear range from 10pM to 1μM, a low limit of detection of 6pM, good selectivity, and a facile one-step operation at room temperature. Practical sample analysis in serum samples indicates the method has good precision and accuracy, which may thus have application potentials for point-of-care screening of DNA in complex clinical and environmental samples. •A label-free DNA fluorescent sensor with simplicity, low cost and high sensitivity is reported.•The sensor is based on an ATMND dye, a hairpin probe, and a highly active exonuclease III.•The ATMND shows obviously different fluorescent properties in the bound and free states.•Exo III effectively catalyzes the cascade target recycling reaction and amplifies the signal.