The complete genome of hydrocarbon-degrading Pseudoalteromonas sp. NJ289 and its phylogenetic relationship

Genus Pseudoalteromonas belongs to Family Pseudoalteromonadaceae in Gammaproteobacteria. A cold-adapted gram-negative bacterium, hydrocarbon-degrading Pseudoalteromonas sp. NJ289, was isolated from sea-ice of the Antarctica region, and sequenced the whole genome through the next generation sequencin...

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Bibliographic Details
Published in:Acta oceanologica Sinica 2017-02, Vol.36 (2), p.88-93
Main Authors: Liu, Fangming, Wang, Yibin, Qu, Changfeng, Zheng, Zhou, Miao, Jinlai, Xu, Hua, Xiao, Tian
Format: Article
Language:English
Subjects:
Adaptability
Annotations
Bacteria
Chromosomes
Climatology
Cold
CRISPR
Earth and Environmental Science
Earth Sciences
Ecology
Engineering Fluid Dynamics
Environmental Chemistry
Enzymatic activity
Enzyme activity
Evolution
Fisheries
Genes
Genomes
Gram-negative bacteria
G＋C含量
Hydrocarbons
Marine
Marine & Freshwater Sciences
Metabolism
Microorganisms
Next-generation sequencing
Oceanography
Phylogenetics
Phylogeny
Pseudoalteromonas
Sea ice
Software
Transfer RNA
亲缘关系
南极地区
基因组
环境适应性
石油烃降解菌
进化生态学
革兰氏阴性细菌
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Summary:Genus Pseudoalteromonas belongs to Family Pseudoalteromonadaceae in Gammaproteobacteria. A cold-adapted gram-negative bacterium, hydrocarbon-degrading Pseudoalteromonas sp. NJ289, was isolated from sea-ice of the Antarctica region, and sequenced the whole genome through the next generation sequencing platform. The assembly yielded three contigs representing two chromosomes and one plasmid with the sizes of 3.2 Mb, 636 kb and 1.8 kb, respectively. The G＋C contents of genome were 40.83% and included 3 589 ORFs. Functional annotation indicated some potential roles in enzymatic activity and environmental adaptability. This study may help for understanding the population diverse, evolutionary ecology and the microbial interaction.
ISSN:0253-505X
1869-1099
DOI:10.1007/s13131-017-0979-1