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Copromyxa laresi n. sp. (Amoebozoa: Tubulinea) and Transfer of Cashia limacoides (Page, 1967) to Copromyxa Zopf, 1885
Five amoeboid organisms of different origin (isolated from fish organs, soil and digestive tract of earthworm) that shared light microscopical and ultrastructural features including type and arrangement of mitochondrial cristae were subjected to phylogenetic analyses based on sequences of SSU rDNA a...
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| Published in: | The Journal of eukaryotic microbiology 2017-03, Vol.64 (2), p.173-182 |
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| cites | cdi_FETCH-LOGICAL-c3869-63c9f1bbeef93531b4e20b518c7479af337a304b49d676094a97eca23dde9a4d3 |
| container_end_page | 182 |
| container_issue | 2 |
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| container_title | The Journal of eukaryotic microbiology |
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| creator | Kostka, Martin Lares‐Jiménez, Luis Fernando Tyml, Tomáš Dyková, Iva |
| description | Five amoeboid organisms of different origin (isolated from fish organs, soil and digestive tract of earthworm) that shared light microscopical and ultrastructural features including type and arrangement of mitochondrial cristae were subjected to phylogenetic analyses based on sequences of SSU rDNA and protein coding genes (actin, cytochrome oxidase I, and eukaryotic elongation factor 2). The reconstruction of multigene phylogeny of the strains studied (i) revealed that they belong to the same single‐genus Copromyxa clade; (ii) strongly supported position of Copromyxa cantabrigiensis (syn. Hartmannella cantabrigiensis) within the genus; (iii) together with comparisons of light and electron microscopy data justified reclassification of Cashia limacoides (syn. Vexillifera expectata) to Copromyxa limacoides n. comb., and (iv) justified description of a new species, Copromyxa laresi n. sp. |
| doi_str_mv | 10.1111/jeu.12349 |
| format | article |
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(Amoebozoa: Tubulinea) and Transfer of Cashia limacoides (Page, 1967) to Copromyxa Zopf, 1885</title><source>Wiley-Blackwell Read & Publish Collection</source><creator>Kostka, Martin ; Lares‐Jiménez, Luis Fernando ; Tyml, Tomáš ; Dyková, Iva</creator><creatorcontrib>Kostka, Martin ; Lares‐Jiménez, Luis Fernando ; Tyml, Tomáš ; Dyková, Iva</creatorcontrib><description>Five amoeboid organisms of different origin (isolated from fish organs, soil and digestive tract of earthworm) that shared light microscopical and ultrastructural features including type and arrangement of mitochondrial cristae were subjected to phylogenetic analyses based on sequences of SSU rDNA and protein coding genes (actin, cytochrome oxidase I, and eukaryotic elongation factor 2). The reconstruction of multigene phylogeny of the strains studied (i) revealed that they belong to the same single‐genus Copromyxa clade; (ii) strongly supported position of Copromyxa cantabrigiensis (syn. Hartmannella cantabrigiensis) within the genus; (iii) together with comparisons of light and electron microscopy data justified reclassification of Cashia limacoides (syn. Vexillifera expectata) to Copromyxa limacoides n. comb., and (iv) justified description of a new species, Copromyxa laresi n. sp.</description><identifier>ISSN: 1066-5234</identifier><identifier>EISSN: 1550-7408</identifier><identifier>DOI: 10.1111/jeu.12349</identifier><identifier>PMID: 27463732</identifier><language>eng</language><publisher>United States: Wiley Subscription Services, Inc</publisher><subject>Actin ; Actins - genetics ; Amoeba ; Amoebozoa - classification ; Amoebozoa - genetics ; Amoebozoa - isolation & purification ; Amoebozoa - ultrastructure ; Animals ; Base Sequence ; Body organs ; Cashia limacoides ; Cristae ; Cytochrome oxidase I ; Cytochromes ; Czech Republic ; Digestive system ; DNA ; DNA, Protozoan - genetics ; DNA, Ribosomal - genetics ; Electron microscopy ; Electron Transport Complex IV - genetics ; Elongation ; Elongation Factor 2 Kinase - genetics ; Euamoebida ; Fish ; Fossils ; free‐living amoebae ; Gastrointestinal tract ; Genes ; Gills - parasitology ; Hartmannella ; limax amoebae ; Lobosea - classification ; Lobosea - genetics ; Lobosea - isolation & purification ; Lobosea - ultrastructure ; Microscopy, Electron ; Mitochondria ; Mitochondria - parasitology ; Mitochondria - ultrastructure ; New species ; Oligochaeta - parasitology ; Organelles - parasitology ; Organelles - ultrastructure ; Phylogeny ; Proteins ; Protozoan Proteins - genetics ; Reclassification ; Sequence Alignment ; Soil ; Soil - parasitology ; Spain ; Species Specificity ; ultrastructure ; Vexillifera ; Zebrafish - parasitology</subject><ispartof>The Journal of eukaryotic microbiology, 2017-03, Vol.64 (2), p.173-182</ispartof><rights>2016 The Author(s) Journal of Eukaryotic Microbiology © 2016 International Society of Protistologists</rights><rights>2016 The Author(s) Journal of Eukaryotic Microbiology © 2016 International Society of Protistologists.</rights><rights>2017 The International Society of Protistologists</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3869-63c9f1bbeef93531b4e20b518c7479af337a304b49d676094a97eca23dde9a4d3</citedby><cites>FETCH-LOGICAL-c3869-63c9f1bbeef93531b4e20b518c7479af337a304b49d676094a97eca23dde9a4d3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27463732$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kostka, Martin</creatorcontrib><creatorcontrib>Lares‐Jiménez, Luis Fernando</creatorcontrib><creatorcontrib>Tyml, Tomáš</creatorcontrib><creatorcontrib>Dyková, Iva</creatorcontrib><title>Copromyxa laresi n. sp. (Amoebozoa: Tubulinea) and Transfer of Cashia limacoides (Page, 1967) to Copromyxa Zopf, 1885</title><title>The Journal of eukaryotic microbiology</title><addtitle>J Eukaryot Microbiol</addtitle><description>Five amoeboid organisms of different origin (isolated from fish organs, soil and digestive tract of earthworm) that shared light microscopical and ultrastructural features including type and arrangement of mitochondrial cristae were subjected to phylogenetic analyses based on sequences of SSU rDNA and protein coding genes (actin, cytochrome oxidase I, and eukaryotic elongation factor 2). The reconstruction of multigene phylogeny of the strains studied (i) revealed that they belong to the same single‐genus Copromyxa clade; (ii) strongly supported position of Copromyxa cantabrigiensis (syn. Hartmannella cantabrigiensis) within the genus; (iii) together with comparisons of light and electron microscopy data justified reclassification of Cashia limacoides (syn. Vexillifera expectata) to Copromyxa limacoides n. comb., and (iv) justified description of a new species, Copromyxa laresi n. sp.</description><subject>Actin</subject><subject>Actins - genetics</subject><subject>Amoeba</subject><subject>Amoebozoa - classification</subject><subject>Amoebozoa - genetics</subject><subject>Amoebozoa - isolation & purification</subject><subject>Amoebozoa - ultrastructure</subject><subject>Animals</subject><subject>Base Sequence</subject><subject>Body organs</subject><subject>Cashia limacoides</subject><subject>Cristae</subject><subject>Cytochrome oxidase I</subject><subject>Cytochromes</subject><subject>Czech Republic</subject><subject>Digestive system</subject><subject>DNA</subject><subject>DNA, Protozoan - genetics</subject><subject>DNA, Ribosomal - genetics</subject><subject>Electron microscopy</subject><subject>Electron Transport Complex IV - genetics</subject><subject>Elongation</subject><subject>Elongation Factor 2 Kinase - genetics</subject><subject>Euamoebida</subject><subject>Fish</subject><subject>Fossils</subject><subject>free‐living amoebae</subject><subject>Gastrointestinal tract</subject><subject>Genes</subject><subject>Gills - parasitology</subject><subject>Hartmannella</subject><subject>limax amoebae</subject><subject>Lobosea - classification</subject><subject>Lobosea - genetics</subject><subject>Lobosea - isolation & purification</subject><subject>Lobosea - ultrastructure</subject><subject>Microscopy, Electron</subject><subject>Mitochondria</subject><subject>Mitochondria - parasitology</subject><subject>Mitochondria - ultrastructure</subject><subject>New species</subject><subject>Oligochaeta - parasitology</subject><subject>Organelles - parasitology</subject><subject>Organelles - ultrastructure</subject><subject>Phylogeny</subject><subject>Proteins</subject><subject>Protozoan Proteins - genetics</subject><subject>Reclassification</subject><subject>Sequence Alignment</subject><subject>Soil</subject><subject>Soil - parasitology</subject><subject>Spain</subject><subject>Species Specificity</subject><subject>ultrastructure</subject><subject>Vexillifera</subject><subject>Zebrafish - parasitology</subject><issn>1066-5234</issn><issn>1550-7408</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><recordid>eNqNkctOGzEUhi0EKhS64AUqS2wSiUl8G1_YRVGAIqR2kWzYWJ6ZM2WimXFqM4L06WsaoBISUr05ls53_nP5ETqlZELTm65hmFDGhdlDRzTPSaYE0fvpT6TM8pQ4RJ9jXBNCJaP0EzpkSkiuODtCw9xvgu-2Tw63LkBscD_BcTPBo1nnofC_vbvAy6EY2qYHN8aur_AyuD7WELCv8dzF-ybVNp0rfVNBxKMf7iecY2qkGuMHj_81uPObOiW0zk_QQe3aCF9e4jFaXS6W8-vs9vvVt_nsNiu5liaTvDQ1LQqA2vCc00IAI0VOdamEMq7mXDlORCFMJZUkRjijoHSMVxUYJyp-jEY73TTCrwHig-2aWELbuh78EC3VSmnGlNH_gTKpmJY5TejZO3Tth9CnRSw1jIgECZWo8Y4qg48xQG03IV0pbC0l9tk2m2yzf21L7NcXxaHooHojX31KwHQHPDYtbD9WsjeL1U7yD-hEnV4</recordid><startdate>201703</startdate><enddate>201703</enddate><creator>Kostka, Martin</creator><creator>Lares‐Jiménez, Luis Fernando</creator><creator>Tyml, Tomáš</creator><creator>Dyková, Iva</creator><general>Wiley Subscription Services, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7TN</scope><scope>8FD</scope><scope>F1W</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>H95</scope><scope>L.G</scope></search><sort><creationdate>201703</creationdate><title>Copromyxa laresi n. sp. (Amoebozoa: Tubulinea) and Transfer of Cashia limacoides (Page, 1967) to Copromyxa Zopf, 1885</title><author>Kostka, Martin ; Lares‐Jiménez, Luis Fernando ; Tyml, Tomáš ; Dyková, Iva</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3869-63c9f1bbeef93531b4e20b518c7479af337a304b49d676094a97eca23dde9a4d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Actin</topic><topic>Actins - genetics</topic><topic>Amoeba</topic><topic>Amoebozoa - classification</topic><topic>Amoebozoa - genetics</topic><topic>Amoebozoa - isolation & purification</topic><topic>Amoebozoa - ultrastructure</topic><topic>Animals</topic><topic>Base Sequence</topic><topic>Body organs</topic><topic>Cashia limacoides</topic><topic>Cristae</topic><topic>Cytochrome oxidase I</topic><topic>Cytochromes</topic><topic>Czech Republic</topic><topic>Digestive system</topic><topic>DNA</topic><topic>DNA, Protozoan - genetics</topic><topic>DNA, Ribosomal - genetics</topic><topic>Electron microscopy</topic><topic>Electron Transport Complex IV - genetics</topic><topic>Elongation</topic><topic>Elongation Factor 2 Kinase - genetics</topic><topic>Euamoebida</topic><topic>Fish</topic><topic>Fossils</topic><topic>free‐living amoebae</topic><topic>Gastrointestinal tract</topic><topic>Genes</topic><topic>Gills - parasitology</topic><topic>Hartmannella</topic><topic>limax amoebae</topic><topic>Lobosea - classification</topic><topic>Lobosea - genetics</topic><topic>Lobosea - isolation & purification</topic><topic>Lobosea - ultrastructure</topic><topic>Microscopy, Electron</topic><topic>Mitochondria</topic><topic>Mitochondria - parasitology</topic><topic>Mitochondria - ultrastructure</topic><topic>New species</topic><topic>Oligochaeta - parasitology</topic><topic>Organelles - parasitology</topic><topic>Organelles - ultrastructure</topic><topic>Phylogeny</topic><topic>Proteins</topic><topic>Protozoan Proteins - genetics</topic><topic>Reclassification</topic><topic>Sequence Alignment</topic><topic>Soil</topic><topic>Soil - parasitology</topic><topic>Spain</topic><topic>Species Specificity</topic><topic>ultrastructure</topic><topic>Vexillifera</topic><topic>Zebrafish - parasitology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kostka, Martin</creatorcontrib><creatorcontrib>Lares‐Jiménez, Luis Fernando</creatorcontrib><creatorcontrib>Tyml, Tomáš</creatorcontrib><creatorcontrib>Dyková, Iva</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Oceanic Abstracts</collection><collection>Technology Research Database</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><jtitle>The Journal of eukaryotic microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kostka, Martin</au><au>Lares‐Jiménez, Luis Fernando</au><au>Tyml, Tomáš</au><au>Dyková, Iva</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Copromyxa laresi n. sp. 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Hartmannella cantabrigiensis) within the genus; (iii) together with comparisons of light and electron microscopy data justified reclassification of Cashia limacoides (syn. Vexillifera expectata) to Copromyxa limacoides n. comb., and (iv) justified description of a new species, Copromyxa laresi n. sp.</abstract><cop>United States</cop><pub>Wiley Subscription Services, Inc</pub><pmid>27463732</pmid><doi>10.1111/jeu.12349</doi><tpages>10</tpages></addata></record> |
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| ispartof | The Journal of eukaryotic microbiology, 2017-03, Vol.64 (2), p.173-182 |
| issn | 1066-5234 1550-7408 |
| language | eng |
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| source | Wiley-Blackwell Read & Publish Collection |
| subjects | Actin Actins - genetics Amoeba Amoebozoa - classification Amoebozoa - genetics Amoebozoa - isolation & purification Amoebozoa - ultrastructure Animals Base Sequence Body organs Cashia limacoides Cristae Cytochrome oxidase I Cytochromes Czech Republic Digestive system DNA DNA, Protozoan - genetics DNA, Ribosomal - genetics Electron microscopy Electron Transport Complex IV - genetics Elongation Elongation Factor 2 Kinase - genetics Euamoebida Fish Fossils free‐living amoebae Gastrointestinal tract Genes Gills - parasitology Hartmannella limax amoebae Lobosea - classification Lobosea - genetics Lobosea - isolation & purification Lobosea - ultrastructure Microscopy, Electron Mitochondria Mitochondria - parasitology Mitochondria - ultrastructure New species Oligochaeta - parasitology Organelles - parasitology Organelles - ultrastructure Phylogeny Proteins Protozoan Proteins - genetics Reclassification Sequence Alignment Soil Soil - parasitology Spain Species Specificity ultrastructure Vexillifera Zebrafish - parasitology |
| title | Copromyxa laresi n. sp. (Amoebozoa: Tubulinea) and Transfer of Cashia limacoides (Page, 1967) to Copromyxa Zopf, 1885 |
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