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Characterization of bacterial communities from Masseiras, a unique Portuguese greenhouse agricultural system
“Masseiras” is an ancient Portuguese agriculture system, where soil was developed from sand dunes enriched with seaweeds over more than a century. Due to the importance for the local economy, this system evolved for greenhouse structures. In this study we compared the bacterial community composition...
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| Published in: | Antonie van Leeuwenhoek 2017-05, Vol.110 (5), p.665-676 |
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| cites | cdi_FETCH-LOGICAL-c432t-6b6f001c372a6da13e5d354c3ceacb780abe351f2df8d065e8812e5457bb80983 |
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| container_title | Antonie van Leeuwenhoek |
| container_volume | 110 |
| creator | Becerra-Castro, Cristina Lopes, Ana Rita Teixeira, Sara Silva, M. Elisabete F. Pimenta, Elisabete Manaia, Célia M. Nunes, Olga C. |
| description | “Masseiras” is an ancient Portuguese agriculture system, where soil was developed from sand dunes enriched with seaweeds over more than a century. Due to the importance for the local economy, this system evolved for greenhouse structures. In this study we compared the bacterial community composition and structure of “Masseiras” soil, aiming at assessing the potential impact of different agricultural practices. The bulk soil of two greenhouses (following or not the recommended agriculture good practices, FGP and NFGP, respectively) was compared based on their physicochemical properties and bacterial community. In both FGP and NFGP,
Proteobacteria
,
Acidobacteria, Actinobacteria, Bacteroidetes, Firmicutes
, and
Gemmatimonadetes
were in a proportion of 5:1:1:1:1:1. However, the bacterial community of soil FGP was richer and more diverse than that of soil NFGP. Members of the classes
Bacilli
and Gemm-1, with higher relative abundance in NFGP and FGP, respectively, were those contributing most for distinguishing the bacterial communities of both soils. The differences in the structure of the bacterial communities correlated (Mantel test) with some soil physicochemical properties, such as electrical conductivity and nitrate and Zn contents, which were significantly higher in soil NFGP than in soil FGP. |
| doi_str_mv | 10.1007/s10482-017-0833-7 |
| format | article |
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Proteobacteria
,
Acidobacteria, Actinobacteria, Bacteroidetes, Firmicutes
, and
Gemmatimonadetes
were in a proportion of 5:1:1:1:1:1. However, the bacterial community of soil FGP was richer and more diverse than that of soil NFGP. Members of the classes
Bacilli
and Gemm-1, with higher relative abundance in NFGP and FGP, respectively, were those contributing most for distinguishing the bacterial communities of both soils. The differences in the structure of the bacterial communities correlated (Mantel test) with some soil physicochemical properties, such as electrical conductivity and nitrate and Zn contents, which were significantly higher in soil NFGP than in soil FGP.</description><identifier>ISSN: 0003-6072</identifier><identifier>EISSN: 1572-9699</identifier><identifier>DOI: 10.1007/s10482-017-0833-7</identifier><identifier>PMID: 28150057</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Actinobacteria ; Agricultural practices ; Agriculture ; Algae ; Bacteria ; Bacteria - classification ; Bacteria - isolation & purification ; Biomedical and Life Sciences ; Biota ; Chemical Phenomena ; Community composition ; DNA, Bacterial - chemistry ; DNA, Bacterial - genetics ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - genetics ; Dunes ; Farm buildings ; Farming systems ; Firmicutes ; Greenhouses ; Horticulture ; Life Sciences ; Local economy ; Medical Microbiology ; Microbiology ; Original Paper ; Physicochemical properties ; Plant Sciences ; Portugal ; Proteobacteria ; Relative abundance ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Soil - chemistry ; Soil Microbiology ; Soil microorganisms ; Soil properties ; Soil Science & Conservation</subject><ispartof>Antonie van Leeuwenhoek, 2017-05, Vol.110 (5), p.665-676</ispartof><rights>Springer International Publishing Switzerland 2017</rights><rights>Antonie van Leeuwenhoek is a copyright of Springer, 2017.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c432t-6b6f001c372a6da13e5d354c3ceacb780abe351f2df8d065e8812e5457bb80983</citedby><cites>FETCH-LOGICAL-c432t-6b6f001c372a6da13e5d354c3ceacb780abe351f2df8d065e8812e5457bb80983</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27903,27904</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28150057$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Becerra-Castro, Cristina</creatorcontrib><creatorcontrib>Lopes, Ana Rita</creatorcontrib><creatorcontrib>Teixeira, Sara</creatorcontrib><creatorcontrib>Silva, M. Elisabete F.</creatorcontrib><creatorcontrib>Pimenta, Elisabete</creatorcontrib><creatorcontrib>Manaia, Célia M.</creatorcontrib><creatorcontrib>Nunes, Olga C.</creatorcontrib><title>Characterization of bacterial communities from Masseiras, a unique Portuguese greenhouse agricultural system</title><title>Antonie van Leeuwenhoek</title><addtitle>Antonie van Leeuwenhoek</addtitle><addtitle>Antonie Van Leeuwenhoek</addtitle><description>“Masseiras” is an ancient Portuguese agriculture system, where soil was developed from sand dunes enriched with seaweeds over more than a century. Due to the importance for the local economy, this system evolved for greenhouse structures. In this study we compared the bacterial community composition and structure of “Masseiras” soil, aiming at assessing the potential impact of different agricultural practices. The bulk soil of two greenhouses (following or not the recommended agriculture good practices, FGP and NFGP, respectively) was compared based on their physicochemical properties and bacterial community. In both FGP and NFGP,
Proteobacteria
,
Acidobacteria, Actinobacteria, Bacteroidetes, Firmicutes
, and
Gemmatimonadetes
were in a proportion of 5:1:1:1:1:1. However, the bacterial community of soil FGP was richer and more diverse than that of soil NFGP. Members of the classes
Bacilli
and Gemm-1, with higher relative abundance in NFGP and FGP, respectively, were those contributing most for distinguishing the bacterial communities of both soils. The differences in the structure of the bacterial communities correlated (Mantel test) with some soil physicochemical properties, such as electrical conductivity and nitrate and Zn contents, which were significantly higher in soil NFGP than in soil FGP.</description><subject>Actinobacteria</subject><subject>Agricultural practices</subject><subject>Agriculture</subject><subject>Algae</subject><subject>Bacteria</subject><subject>Bacteria - classification</subject><subject>Bacteria - isolation & purification</subject><subject>Biomedical and Life Sciences</subject><subject>Biota</subject><subject>Chemical Phenomena</subject><subject>Community composition</subject><subject>DNA, Bacterial - chemistry</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - chemistry</subject><subject>DNA, Ribosomal - genetics</subject><subject>Dunes</subject><subject>Farm buildings</subject><subject>Farming systems</subject><subject>Firmicutes</subject><subject>Greenhouses</subject><subject>Horticulture</subject><subject>Life Sciences</subject><subject>Local economy</subject><subject>Medical Microbiology</subject><subject>Microbiology</subject><subject>Original Paper</subject><subject>Physicochemical properties</subject><subject>Plant Sciences</subject><subject>Portugal</subject><subject>Proteobacteria</subject><subject>Relative abundance</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Soil - chemistry</subject><subject>Soil Microbiology</subject><subject>Soil microorganisms</subject><subject>Soil properties</subject><subject>Soil Science & Conservation</subject><issn>0003-6072</issn><issn>1572-9699</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><recordid>eNqNkUtr3TAQRkVpaW4eP6CbIOimi7gZSdbDy3Bp0kJCs2jXQpbHNw62lUjWIvn11cVpKYVAV3rMmU8jDiEfGHxmAPo8MagNr4DpCowQlX5DNkxqXjWqad6SDQCISoHmB-QwpftybJTR78kBN0wCSL0h4_bORecXjMOzW4Yw09DTdr1wI_VhmvI8LAMm2scw0RuXEg7RpTPqaKk8ZqS3IS55lzEh3UXE-S7ksnW7OPg8LjmWnPSUFpyOybvejQlPXtYj8vPyy4_t1-r6-9W37cV15WvBl0q1qgdgXmjuVOeYQNkJWXvh0flWG3AtCsl63vWmAyXRGMZR1lK3rYHGiCPyac19iKEMmBY7DcnjOLoZy2yWmYYZUzea_QeqpKyBy33qx3_Q-5DjXD5SKKM46MaoQrGV8jGkFLG3D3GYXHyyDOzeml2t2WLN7q1ZXXpOX5JzO2H3p-O3pgLwFUilNO8w_vX0q6m_AF1io2I</recordid><startdate>20170501</startdate><enddate>20170501</enddate><creator>Becerra-Castro, Cristina</creator><creator>Lopes, Ana Rita</creator><creator>Teixeira, Sara</creator><creator>Silva, M. 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Elisabete F.</au><au>Pimenta, Elisabete</au><au>Manaia, Célia M.</au><au>Nunes, Olga C.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Characterization of bacterial communities from Masseiras, a unique Portuguese greenhouse agricultural system</atitle><jtitle>Antonie van Leeuwenhoek</jtitle><stitle>Antonie van Leeuwenhoek</stitle><addtitle>Antonie Van Leeuwenhoek</addtitle><date>2017-05-01</date><risdate>2017</risdate><volume>110</volume><issue>5</issue><spage>665</spage><epage>676</epage><pages>665-676</pages><issn>0003-6072</issn><eissn>1572-9699</eissn><abstract>“Masseiras” is an ancient Portuguese agriculture system, where soil was developed from sand dunes enriched with seaweeds over more than a century. Due to the importance for the local economy, this system evolved for greenhouse structures. In this study we compared the bacterial community composition and structure of “Masseiras” soil, aiming at assessing the potential impact of different agricultural practices. The bulk soil of two greenhouses (following or not the recommended agriculture good practices, FGP and NFGP, respectively) was compared based on their physicochemical properties and bacterial community. In both FGP and NFGP,
Proteobacteria
,
Acidobacteria, Actinobacteria, Bacteroidetes, Firmicutes
, and
Gemmatimonadetes
were in a proportion of 5:1:1:1:1:1. However, the bacterial community of soil FGP was richer and more diverse than that of soil NFGP. Members of the classes
Bacilli
and Gemm-1, with higher relative abundance in NFGP and FGP, respectively, were those contributing most for distinguishing the bacterial communities of both soils. The differences in the structure of the bacterial communities correlated (Mantel test) with some soil physicochemical properties, such as electrical conductivity and nitrate and Zn contents, which were significantly higher in soil NFGP than in soil FGP.</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><pmid>28150057</pmid><doi>10.1007/s10482-017-0833-7</doi><tpages>12</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Actinobacteria Agricultural practices Agriculture Algae Bacteria Bacteria - classification Bacteria - isolation & purification Biomedical and Life Sciences Biota Chemical Phenomena Community composition DNA, Bacterial - chemistry DNA, Bacterial - genetics DNA, Ribosomal - chemistry DNA, Ribosomal - genetics Dunes Farm buildings Farming systems Firmicutes Greenhouses Horticulture Life Sciences Local economy Medical Microbiology Microbiology Original Paper Physicochemical properties Plant Sciences Portugal Proteobacteria Relative abundance RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Soil - chemistry Soil Microbiology Soil microorganisms Soil properties Soil Science & Conservation |
| title | Characterization of bacterial communities from Masseiras, a unique Portuguese greenhouse agricultural system |
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