Full genome sequence of jujube mosaic-associated virus, a new member of the family Caulimoviridae

We report a new circular DNA virus identified from a Chinese jujube tree showing mosaic-like symptoms. The genome of this virus is 7194 bp in length and contains five putative open reading frames (ORFs), all on the plus-strand of the genome. The genomic organization, primer binding sites and the siz...

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Bibliographic Details
Published in:Archives of virology 2017-10, Vol.162 (10), p.3221-3224
Main Authors: Du, Kaitong, Liu, Sijia, Chen, Zhaorong, Fan, Zaifeng, Wang, He, Tian, Guozhong, Zhou, Tao
Format: Article
Language:English
Subjects:
Annotated Sequence Record
Binding sites
Biomedical and Life Sciences
Biomedicine
Caulimoviridae - genetics
Circular DNA
Genome, Viral
Genomes
Infectious Diseases
Medical Microbiology
Mosaic Viruses - genetics
Nucleotide sequence
Open reading frames
Phylogeny
Virology
Ziziphus - virology
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Description
Summary:We report a new circular DNA virus identified from a Chinese jujube tree showing mosaic-like symptoms. The genome of this virus is 7194 bp in length and contains five putative open reading frames (ORFs), all on the plus-strand of the genome. The genomic organization, primer binding sites and the sizes of the ORFs were similar to those reported for other badnaviruses (family Caulimoviridae ), except for ORF3, which was split into ORF3a and ORF3b with a 70-nt intergenic region. Furthermore, this new virus shares low nucleotide sequence identity (
ISSN:0304-8608
1432-8798
DOI:10.1007/s00705-017-3438-6