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Historical diversification of floodplain forest specialist species in the Amazon: a case study with two species of the avian genus Xiphorhynchus (Aves: Dendrocolaptidae)
Phylogeographical and population genetics methods are used to reconstruct the diversification history of two species of the genus Xiphorhynchus (Aves: Dendrocolaptidae) associated with seasonally flooded forest types in Amazonia. Sequences of the mitochondrial gene cytochrome b were assessed for 21...
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Published in: | Biological journal of the Linnean Society 2006-10, Vol.89 (2), p.383-395 |
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description | Phylogeographical and population genetics methods are used to reconstruct the diversification history of two species of the genus Xiphorhynchus (Aves: Dendrocolaptidae) associated with seasonally flooded forest types in Amazonia. Sequences of the mitochondrial gene cytochrome b were assessed for 21 and 30 individuals, belonging to eight and ten populations, of Xiphorhynchus kienerii and Xiphorhynchus obsoletus, respectively. Uncorrected genetic distances among unique haplotypes recovered ranged only from 0.01% to 0.4% for both species. Over 90% of the genetic variation detected in both species was partitioned within populations, and therefore was not structured geographically. Mismatch distributions and values of Tajima's D-tests indicate that both X. kienerii and X. obsoletus have had small evolutionary effective population sizes, but experienced a recent demographic expansion. These demographic expansions are tentatively dated as occurring over the last 18 000 years BP, a time frame which coincides with the establishment of the early and mid-Holocene age floodplain forest in most of central and eastern Amazonia, following a period of increased river stages throughout the basin. Based on phylogenetic, phylogeographical, and populations genetics data obtained for X. kienerii and X. obsoletus, an evolutionary scenario is proposed to account for the historical diversification of floodplain specialist species in Amazonia. |
doi_str_mv | 10.1111/j.1095-8312.2006.00703.x |
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Sequences of the mitochondrial gene cytochrome b were assessed for 21 and 30 individuals, belonging to eight and ten populations, of Xiphorhynchus kienerii and Xiphorhynchus obsoletus, respectively. Uncorrected genetic distances among unique haplotypes recovered ranged only from 0.01% to 0.4% for both species. Over 90% of the genetic variation detected in both species was partitioned within populations, and therefore was not structured geographically. Mismatch distributions and values of Tajima's D-tests indicate that both X. kienerii and X. obsoletus have had small evolutionary effective population sizes, but experienced a recent demographic expansion. These demographic expansions are tentatively dated as occurring over the last 18 000 years BP, a time frame which coincides with the establishment of the early and mid-Holocene age floodplain forest in most of central and eastern Amazonia, following a period of increased river stages throughout the basin. 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Biological and molecular evolution ; phylogenetics ; phylogeography ; population genetics ; seasonally flooded forest ; upland (terra-firme) forest ; vertebrates ; Xiphorhynchus kienerii ; Xiphorhynchus obsoletus</subject><ispartof>Biological journal of the Linnean Society, 2006-10, Vol.89 (2), p.383-395</ispartof><rights>2006 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4363-de920f1556ac446583a24702897356c1c835e8d8cbfd1b215113eb775371df483</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=18128428$$DView record in Pascal Francis$$Hfree_for_read</backlink></links><search><creatorcontrib>ALEIXO, ALEXANDRE</creatorcontrib><title>Historical diversification of floodplain forest specialist species in the Amazon: a case study with two species of the avian genus Xiphorhynchus (Aves: Dendrocolaptidae)</title><title>Biological journal of the Linnean Society</title><description>Phylogeographical and population genetics methods are used to reconstruct the diversification history of two species of the genus Xiphorhynchus (Aves: Dendrocolaptidae) associated with seasonally flooded forest types in Amazonia. Sequences of the mitochondrial gene cytochrome b were assessed for 21 and 30 individuals, belonging to eight and ten populations, of Xiphorhynchus kienerii and Xiphorhynchus obsoletus, respectively. Uncorrected genetic distances among unique haplotypes recovered ranged only from 0.01% to 0.4% for both species. Over 90% of the genetic variation detected in both species was partitioned within populations, and therefore was not structured geographically. Mismatch distributions and values of Tajima's D-tests indicate that both X. kienerii and X. obsoletus have had small evolutionary effective population sizes, but experienced a recent demographic expansion. These demographic expansions are tentatively dated as occurring over the last 18 000 years BP, a time frame which coincides with the establishment of the early and mid-Holocene age floodplain forest in most of central and eastern Amazonia, following a period of increased river stages throughout the basin. Based on phylogenetic, phylogeographical, and populations genetics data obtained for X. kienerii and X. obsoletus, an evolutionary scenario is proposed to account for the historical diversification of floodplain specialist species in Amazonia.</description><subject>Amazonian biogeography</subject><subject>Aves</subject><subject>Biological and medical sciences</subject><subject>Biological evolution</subject><subject>evolution</subject><subject>Forestry</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>General forest ecology</subject><subject>Generalities. Production, biomass. Quality of wood and forest products. General forest ecology</subject><subject>Genetics of eukaryotes. Biological and molecular evolution</subject><subject>phylogenetics</subject><subject>phylogeography</subject><subject>population genetics</subject><subject>seasonally flooded forest</subject><subject>upland (terra-firme) forest</subject><subject>vertebrates</subject><subject>Xiphorhynchus kienerii</subject><subject>Xiphorhynchus obsoletus</subject><issn>0024-4066</issn><issn>1095-8312</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2006</creationdate><recordtype>article</recordtype><recordid>eNpFkU1v1DAQhiMEEkvhN-ALCA4J_oy9FZdtoduiAgeoirhYs47TeMnGwc5-8Y_4lzhsWXzxjOaZd-x5swwRXJB03iwLgqciV4zQgmJcFhhLzIrdg2xyLDzMJhhTnnNclo-zJzEuMSaESzrJfl-6OPjgDLSochsboqtTMjjfIV-juvW-6ltwHap9sHFAsbfGQev-hTaiVBwai2Yr-OW7UwTIQLQoDutqj7ZuaNCw9Uc4iY4wbBx06M5264i-ub7xodl3pknZq9nGxlP0znZV8Ma30A-uAvv6afaohjbaZ_f3SXZz8f7r-WV-_Xl-dT67zg1nJcsrO6W4JkKUYDgvhWJAucRUTSUTpSFGMWFVpcyirsiCEkEIswspBZOkqrliJ9nLg24f_M91-rJeuWhs20Jn_TpqMhWcJMkEvrgHIab11QE646Lug1tB2GuiCFWcjoJvD9zWtXb_v471aKBe6tEnPfqkRwP1XwP1Tp9dfUhBas8P7Wnldndsh_BDl5JJoW8_zfXtXJXyI7nQ3xP__MDX4DXchfSkmy8UE5Ysx2kUZn8AQfOrOQ</recordid><startdate>200610</startdate><enddate>200610</enddate><creator>ALEIXO, ALEXANDRE</creator><general>Oxford, UK : Blackwell Publishing Ltd</general><general>Blackwell Publishing Ltd</general><general>Blackwell</general><scope>FBQ</scope><scope>BSCLL</scope><scope>IQODW</scope><scope>7SN</scope><scope>C1K</scope></search><sort><creationdate>200610</creationdate><title>Historical diversification of floodplain forest specialist species in the Amazon: a case study with two species of the avian genus Xiphorhynchus (Aves: Dendrocolaptidae)</title><author>ALEIXO, ALEXANDRE</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4363-de920f1556ac446583a24702897356c1c835e8d8cbfd1b215113eb775371df483</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2006</creationdate><topic>Amazonian biogeography</topic><topic>Aves</topic><topic>Biological and medical sciences</topic><topic>Biological evolution</topic><topic>evolution</topic><topic>Forestry</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>General forest ecology</topic><topic>Generalities. Production, biomass. Quality of wood and forest products. General forest ecology</topic><topic>Genetics of eukaryotes. Biological and molecular evolution</topic><topic>phylogenetics</topic><topic>phylogeography</topic><topic>population genetics</topic><topic>seasonally flooded forest</topic><topic>upland (terra-firme) forest</topic><topic>vertebrates</topic><topic>Xiphorhynchus kienerii</topic><topic>Xiphorhynchus obsoletus</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>ALEIXO, ALEXANDRE</creatorcontrib><collection>AGRIS</collection><collection>Istex</collection><collection>Pascal-Francis</collection><collection>Ecology Abstracts</collection><collection>Environmental Sciences and Pollution Management</collection><jtitle>Biological journal of the Linnean Society</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>ALEIXO, ALEXANDRE</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Historical diversification of floodplain forest specialist species in the Amazon: a case study with two species of the avian genus Xiphorhynchus (Aves: Dendrocolaptidae)</atitle><jtitle>Biological journal of the Linnean Society</jtitle><date>2006-10</date><risdate>2006</risdate><volume>89</volume><issue>2</issue><spage>383</spage><epage>395</epage><pages>383-395</pages><issn>0024-4066</issn><eissn>1095-8312</eissn><coden>BJLSBG</coden><abstract>Phylogeographical and population genetics methods are used to reconstruct the diversification history of two species of the genus Xiphorhynchus (Aves: Dendrocolaptidae) associated with seasonally flooded forest types in Amazonia. Sequences of the mitochondrial gene cytochrome b were assessed for 21 and 30 individuals, belonging to eight and ten populations, of Xiphorhynchus kienerii and Xiphorhynchus obsoletus, respectively. Uncorrected genetic distances among unique haplotypes recovered ranged only from 0.01% to 0.4% for both species. Over 90% of the genetic variation detected in both species was partitioned within populations, and therefore was not structured geographically. Mismatch distributions and values of Tajima's D-tests indicate that both X. kienerii and X. obsoletus have had small evolutionary effective population sizes, but experienced a recent demographic expansion. These demographic expansions are tentatively dated as occurring over the last 18 000 years BP, a time frame which coincides with the establishment of the early and mid-Holocene age floodplain forest in most of central and eastern Amazonia, following a period of increased river stages throughout the basin. Based on phylogenetic, phylogeographical, and populations genetics data obtained for X. kienerii and X. obsoletus, an evolutionary scenario is proposed to account for the historical diversification of floodplain specialist species in Amazonia.</abstract><cop>Oxford, UK</cop><pub>Oxford, UK : Blackwell Publishing Ltd</pub><doi>10.1111/j.1095-8312.2006.00703.x</doi><tpages>13</tpages><oa>free_for_read</oa></addata></record> |
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source | Oxford Journals Online |
subjects | Amazonian biogeography Aves Biological and medical sciences Biological evolution evolution Forestry Fundamental and applied biological sciences. Psychology General forest ecology Generalities. Production, biomass. Quality of wood and forest products. General forest ecology Genetics of eukaryotes. Biological and molecular evolution phylogenetics phylogeography population genetics seasonally flooded forest upland (terra-firme) forest vertebrates Xiphorhynchus kienerii Xiphorhynchus obsoletus |
title | Historical diversification of floodplain forest specialist species in the Amazon: a case study with two species of the avian genus Xiphorhynchus (Aves: Dendrocolaptidae) |
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