Interferon regulatory factor 6 variants affect nasolabial morphology in East Asian populations

• Published in: Archives of oral biology 2018-01, Vol.85, p.142-147
• Main Authors: Tomita, Daisuke, Yamaguchi, Tetsutaro, Nakawaki, Takatoshi, Hikita, Yu, Adel, Mohamed, Kim, Yong-Il, Haga, Shugo, Takahashi, Masahiro, Kawaguchi, Akira, Isa, Mutsumi, Park, Soo-Byung, Ishida, Hajime, Maki, Koutaro, Kimura, Ryosuke
• Format: Article
• Language: English
• Subjects: Adult; Asian Continental Ancestry Group - genetics; Cephalometry; Cleft lip; Cleft Lip - ethnology; Cleft Lip - genetics; Cleft palate; Cleft Palate - ethnology; Cleft Palate - genetics; Dentistry; Female; Genetic Predisposition to Disease; Genotype; Humans; Interferon regulatory factor 6; Interferon Regulatory Factors - genetics; Japan; Lip; Male; Nose; Polymorphism, Single Nucleotide; Republic of Korea
• ISSN: 0003-9969; 1879-1506
• DOI: 10.1016/j.archoralbio.2017.10.005

•Our study demonstrates that IRF6 SNPs have a role in facial morphogenesis.•IRF6 SNPs were found to be associated with the sagittal nasolabial morphology.•The results suggest a role of IRF6 in NSCL/P. The interferon regulatory factor 6 gene (IRF6) is one of the most conspicuous genes among a large number of candidate risk genes for non-syndromic cleft lip with or without cleft palate, which is considered to be a multifactorial defect. Variants of IRF6 are also suggested to affect normal craniofacial variations, especially in the area of the nose and the upper lip. In the present study, we used lateral cephalograms to establish the relationship between IRF6 and sagittal nasolabial morphology in healthy East Asian subjects. Genomic DNA was extracted from 215 Japanese and 226 Korean individuals, and genotyped for five IRF6 single nucleotide polymorphisms (SNPs): rs17389541, rs642961, rs2013162, rs2235371, and rs7802. These SNPs were tested by multiple regression analyses for their association with craniofacial measurements obtained from lateral cephalometrics. We detected a significant association between the derived variants, rs2013162 and rs2235371 and the distances between a facial bone plane indicated by distance from Nasion and Point A (NA plane) to soft tissue landmarks; the Subalare (NA-Sbal) and the Subnasale (NA-Sn) in the sagittal plane. Our results indicate that IRF6 variants play an important role in the normal range of variation in nasolabial soft-tissue morphology.