Hydrostatic and osmotic pressure study of the hairpin ribozyme

• Published in: Biochimica et biophysica acta 2006-03, Vol.1764 (3), p.573-577
• Main Authors: Hervé, Guy, Tobé, Sylvia, Heams, Thomas, Vergne, Jacques, Maurel, Marie-Christine
• Format: Article
• Language: English
• Subjects: Adenine - chemistry; Base Sequence; Biochemistry, Molecular Biology; Coenzymes - chemistry; Hairpin ribozyme; High pressure; Hydrostatic Pressure; Life Sciences; Molecular Sequence Data; Osmotic Pressure; RNA world; RNA, Catalytic - chemistry
• ISSN: 1570-9639; 0006-3002; 1878-1454
• DOI: 10.1016/j.bbapap.2006.01.020

The recent discovery of numerous catalytically active RNAs in various living species as well as the in vitro selection of a large series of RNA aptamers able to bind specifically various molecules such as metabolites and co-factors, emphasize the adaptability of RNAs through the plasticity of their secondary structure. Furthermore, all these observations give support to the “RNA world” hypothesis as a step in the primitive development of life on Earth. On this background, we used high pressure to study the mechanism of action of a model hairpin ribozyme which exhibits self-cleavage and ligation. The activation volume (Δ V ≠) of the cleavage reaction (34 ± 4 ml/mol) indicates that an important compaction of the RNA molecule occurs during the reaction and must be accompanied by a significant movement of water molecules . Indeed, such a release of 78 ± 4 water molecules per RNA molecule could be measured by complementary osmotic shock experiments. These results are consistent with the information provided by the structural studies which indicate that two loops of the RNA molecule should come into contact for the reaction to occur .The high pressure study of a modified form of the ribozyme whose activity is strictly dependent on the presence of adenine as a co-factor should bring some information about the structural significance of this important Δ V ≠ of activation.