Next-generation sequencing characterization of HLA in multi-generation families of Kuwaiti descent

• Published in: Human immunology 2018-03, Vol.79 (3), p.137-142
• Main Authors: Ameen, Reem, Shemmari, Salem Al, Askar, Medhat
• Format: Article
• Language: English
• Subjects: Family study; HLA haplotype; Next-generation sequencing
• ISSN: 0198-8859; 1879-1166
• DOI: 10.1016/j.humimm.2017.12.012

The frequency of HLA genes in one population may not accurately represent frequencies in other populations. In this study, we characterized extended human leukocyte antigen (HLA) haplotypes in several families of Kuwaiti descent by high-resolution typing using next-generation technology. A total 81 members (including patients and related donors) from 21 families were enrolled. No haplotypes were shared among multiple families. Of 77 haplotypes identified, 23 were not listed in the HaploStats database. Two haplotypes were most common in African Americans, six in Asian Pacific Islanders, three in Caucasians, three in Hispanics, and three in Native Americans. The remaining identified haplotypes were not among the most common 200 HLA haplotypes in any of the five major populations. This cohort had 202 (19%) unique alleles, including 20 rare alleles, 16 very rare alleles, and 2 novel ones. Furthermore, no frequency data were available for 30% (23/77) of the observed haplotypes, and 6% (3/49) of B ∼ C blocks identified were not available in the HaploStats database. Kuwaiti individuals carry unique HLA haplotypes that are not shared by the majority of individuals historically reported to the US National Marrow Donor Program registry.