Dissecting the function of Cullin-RING ubiquitin ligase complex genes in planarian regeneration

• Published in: Developmental biology 2018-01, Vol.433 (2), p.210-217
• Main Authors: Strand, Nicholas S., Allen, John M., Ghulam, Mahjoobah, Taylor, Matthew R., Munday, Roma K., Carrillo, Melissa, Movsesyan, Artem, Zayas, Ricardo M.
• Format: Article
• Language: English
• Subjects: Animals; Cullin; Cullin Proteins - genetics; Cullin Proteins - physiology; E3 ubiquitin ligase; F-box; F-Box Motifs; F-Box Proteins - physiology; Gene Expression Regulation; Genes, Helminth; Genetic Pleiotropy; Helminth Proteins - physiology; Multiprotein Complexes; Phenotype; Planarian; Planarians - genetics; Planarians - physiology; Regeneration; Regeneration - physiology; RNA Interference; RNA, Double-Stranded - genetics; RNA, Helminth - genetics; RNA, Small Interfering - genetics; Stem cells; Stem Cells - physiology; Ubiquitin - physiology; Ubiquitin-Protein Ligases - physiology
• ISSN: 0012-1606; 1095-564X
• DOI: 10.1016/j.ydbio.2017.10.011

The ubiquitin system plays a role in nearly every aspect of eukaryotic cell biology. The enzymes responsible for transferring ubiquitin onto specific substrates are the E3 ubiquitin ligases, a large and diverse family of proteins, for which biological roles and target substrates remain largely undefined. Studies using model organisms indicate that ubiquitin signaling mediates key steps in developmental processes and tissue regeneration. Here, we used the freshwater planarian, Schmidtea mediterranea, to investigate the role of Cullin-RING ubiquitin ligase (CRL) complexes in stem cell regulation during regeneration. We identified six S. mediterranea cullin genes, and used RNAi to uncover roles for homologs of Cullin-1, −3 and −4 in planarian regeneration. The cullin-1 RNAi phenotype included defects in blastema formation, organ regeneration, lesions, and lysis. To further investigate the function of cullin-1-mediated cellular processes in planarians, we examined genes encoding the adaptor protein Skp1 and F-box substrate-recognition proteins that are predicted to partner with Cullin-1. RNAi against skp1 resulted in phenotypes similar to cullin-1 RNAi, and an RNAi screen of the F-box genes identified 19 genes that recapitulated aspects of cullin-1 RNAi, including ones that in mammals are involved in stem cell regulation and cancer biology. Our data provides evidence that CRLs play discrete roles in regenerative processes and provide a platform to investigate how CRLs regulate stem cells in vivo. •cullin-1 is ubiquitously expressed in Schmidtea mediterranea.•cullin-1 RNAi knockdown led to pleiotropic regeneration defects.•Inhibition of F-box genes recapitulated aspects of cullin-1 RNAi.•Our data provides a model to investigate how Cullin-1 E3 ubiquitin ligases regulate stem cells in vivo.