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Bacterial community structure in response to environmental impacts in the intertidal sediments along the Yangtze Estuary, China
This study was designed to investigate the characteristics of bacterial communities in intertidal sediments along the Yangtze Estuary and their responses to environmental factors. The results showed that bacterial abundance was significantly correlated with salinity, SO42− and total organic carbon,...
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Published in: | Marine pollution bulletin 2018-01, Vol.126, p.141-149 |
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creator | Guo, Xing-pan Lu, Da-pei Niu, Zuo-shun Feng, Jing-nan Chen, Yu-ru Tou, Fei-yun Liu, Min Yang, Yi |
description | This study was designed to investigate the characteristics of bacterial communities in intertidal sediments along the Yangtze Estuary and their responses to environmental factors. The results showed that bacterial abundance was significantly correlated with salinity, SO42− and total organic carbon, while bacterial diversity was significantly correlated with SO42− and total nitrogen. At different taxonomic levels, both the dominant taxa and their abundances varied among the eight samples, with Proteobacteria being the most dominant phylum in general. Cluster analysis revealed that the bacterial community structure was influenced by river runoff and sewerage discharge. Moreover, SO42−, salinity and total phosphorus were the vital environmental factors that influenced the bacterial community structure. Quantitative PCR and sequencing of sulphate-reducing bacteria indicated that the sulphate reduction process occurs frequently in intertidal sediments. These findings are important to understand the microbial ecology and biogeochemical cycles in estuarine environments.
•Bacterial community was investigated in the intertidal sediments along the Yangtze Estuary.•Proteobacteria was the most dominant phylum in general.•SO42−, salinity, and total phosphorus were the vital environmental factors that influenced the bacterial community structure.•The sulphate reduction process occurred frequently in the intertidal sediments. |
doi_str_mv | 10.1016/j.marpolbul.2017.11.003 |
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•Bacterial community was investigated in the intertidal sediments along the Yangtze Estuary.•Proteobacteria was the most dominant phylum in general.•SO42−, salinity, and total phosphorus were the vital environmental factors that influenced the bacterial community structure.•The sulphate reduction process occurred frequently in the intertidal sediments.</description><identifier>ISSN: 0025-326X</identifier><identifier>EISSN: 1879-3363</identifier><identifier>DOI: 10.1016/j.marpolbul.2017.11.003</identifier><identifier>PMID: 29421081</identifier><language>eng</language><publisher>England: Elsevier Ltd</publisher><subject>Bacteria ; Bacteria - classification ; Bacterial community ; Biogeochemical cycle ; Biogeochemical cycles ; Biogeochemistry ; Brackishwater environment ; China ; Cluster analysis ; Communities ; Community structure ; DNA ; Ecosystem ; Environmental factors ; Environmental impact ; Estuaries ; Estuarine dynamics ; Estuarine environments ; Geologic Sediments - microbiology ; Intertidal sediment ; Microbial Consortia ; Microorganisms ; MiSeq sequencing ; Nitrogen ; Nucleotide sequence ; Organic carbon ; PCR ; Phosphorus ; River discharge ; River flow ; Rivers ; Rivers - microbiology ; Runoff ; Salinity ; Salinity effects ; Sediment ; Sediments ; Sewerage ; Studies ; Sulfate reduction ; Sulfate-reducing bacteria ; Sulfates ; Sulphate reduction ; Total organic carbon ; Yangtze Estuary</subject><ispartof>Marine pollution bulletin, 2018-01, Vol.126, p.141-149</ispartof><rights>2017 Elsevier Ltd</rights><rights>Copyright © 2017 Elsevier Ltd. All rights reserved.</rights><rights>Copyright Elsevier BV Jan 2018</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c399t-736b9da9bb4bffc42fe050e5063d4e3051cfd215b21f3b25a0558b09f410af993</citedby><cites>FETCH-LOGICAL-c399t-736b9da9bb4bffc42fe050e5063d4e3051cfd215b21f3b25a0558b09f410af993</cites><orcidid>0000-0002-6794-2241</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29421081$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Guo, Xing-pan</creatorcontrib><creatorcontrib>Lu, Da-pei</creatorcontrib><creatorcontrib>Niu, Zuo-shun</creatorcontrib><creatorcontrib>Feng, Jing-nan</creatorcontrib><creatorcontrib>Chen, Yu-ru</creatorcontrib><creatorcontrib>Tou, Fei-yun</creatorcontrib><creatorcontrib>Liu, Min</creatorcontrib><creatorcontrib>Yang, Yi</creatorcontrib><title>Bacterial community structure in response to environmental impacts in the intertidal sediments along the Yangtze Estuary, China</title><title>Marine pollution bulletin</title><addtitle>Mar Pollut Bull</addtitle><description>This study was designed to investigate the characteristics of bacterial communities in intertidal sediments along the Yangtze Estuary and their responses to environmental factors. The results showed that bacterial abundance was significantly correlated with salinity, SO42− and total organic carbon, while bacterial diversity was significantly correlated with SO42− and total nitrogen. At different taxonomic levels, both the dominant taxa and their abundances varied among the eight samples, with Proteobacteria being the most dominant phylum in general. Cluster analysis revealed that the bacterial community structure was influenced by river runoff and sewerage discharge. Moreover, SO42−, salinity and total phosphorus were the vital environmental factors that influenced the bacterial community structure. Quantitative PCR and sequencing of sulphate-reducing bacteria indicated that the sulphate reduction process occurs frequently in intertidal sediments. These findings are important to understand the microbial ecology and biogeochemical cycles in estuarine environments.
•Bacterial community was investigated in the intertidal sediments along the Yangtze Estuary.•Proteobacteria was the most dominant phylum in general.•SO42−, salinity, and total phosphorus were the vital environmental factors that influenced the bacterial community structure.•The sulphate reduction process occurred frequently in the intertidal sediments.</description><subject>Bacteria</subject><subject>Bacteria - classification</subject><subject>Bacterial community</subject><subject>Biogeochemical cycle</subject><subject>Biogeochemical cycles</subject><subject>Biogeochemistry</subject><subject>Brackishwater environment</subject><subject>China</subject><subject>Cluster analysis</subject><subject>Communities</subject><subject>Community structure</subject><subject>DNA</subject><subject>Ecosystem</subject><subject>Environmental factors</subject><subject>Environmental impact</subject><subject>Estuaries</subject><subject>Estuarine dynamics</subject><subject>Estuarine environments</subject><subject>Geologic Sediments - microbiology</subject><subject>Intertidal sediment</subject><subject>Microbial Consortia</subject><subject>Microorganisms</subject><subject>MiSeq sequencing</subject><subject>Nitrogen</subject><subject>Nucleotide sequence</subject><subject>Organic carbon</subject><subject>PCR</subject><subject>Phosphorus</subject><subject>River discharge</subject><subject>River flow</subject><subject>Rivers</subject><subject>Rivers - microbiology</subject><subject>Runoff</subject><subject>Salinity</subject><subject>Salinity effects</subject><subject>Sediment</subject><subject>Sediments</subject><subject>Sewerage</subject><subject>Studies</subject><subject>Sulfate reduction</subject><subject>Sulfate-reducing bacteria</subject><subject>Sulfates</subject><subject>Sulphate reduction</subject><subject>Total organic carbon</subject><subject>Yangtze Estuary</subject><issn>0025-326X</issn><issn>1879-3363</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><recordid>eNqFkU1v1DAQhi1ERZfCXwBLXDiQMLbzsTm2q_IhVeoFJDhZjjNuvUrsYDuVlgt_vQ5beuDSkw_zvDPW-xDylkHJgDUf9-WkwuzHfhlLDqwtGSsBxDOyYdu2K4RoxHOyAeB1IXjz45S8jHEPAC1v2QtyyruKM9iyDflzoXTCYNVItZ-mxdl0oDGFRaclILWOBoyzdxFp8hTdnQ3eTehSDthpzuG4Qul2ZfOiZIc8iTjYFYpUjd7d_B3_VO4m_UZ6GdOiwuED3d1ap16RE6PGiK8f3jPy_dPlt92X4ur689fd-VWhRdelohVN3w2q6_uqN0ZX3CDUgDU0YqhQQM20GTire86M6HmtoK63PXSmYqBM14kz8v64dw7-14IxyclGjeOoHPolSg7AoAXRrOi7_9C9X4LLv8tUVTVVrphnqj1SOvgYAxo5B5ulHCQDuTqSe_noSK6OJGMyO8rJNw_7l37C4TH3T0oGzo8A5kLuLAYZtUWnc6kBdZKDt08euQcStali</recordid><startdate>201801</startdate><enddate>201801</enddate><creator>Guo, Xing-pan</creator><creator>Lu, Da-pei</creator><creator>Niu, Zuo-shun</creator><creator>Feng, Jing-nan</creator><creator>Chen, Yu-ru</creator><creator>Tou, Fei-yun</creator><creator>Liu, Min</creator><creator>Yang, Yi</creator><general>Elsevier Ltd</general><general>Elsevier BV</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7ST</scope><scope>7T7</scope><scope>7TN</scope><scope>7TV</scope><scope>7U7</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>SOI</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-6794-2241</orcidid></search><sort><creationdate>201801</creationdate><title>Bacterial community structure in response to environmental impacts in the intertidal sediments along the Yangtze Estuary, China</title><author>Guo, Xing-pan ; Lu, Da-pei ; Niu, Zuo-shun ; Feng, Jing-nan ; Chen, Yu-ru ; Tou, Fei-yun ; Liu, Min ; Yang, Yi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c399t-736b9da9bb4bffc42fe050e5063d4e3051cfd215b21f3b25a0558b09f410af993</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Bacteria</topic><topic>Bacteria - classification</topic><topic>Bacterial community</topic><topic>Biogeochemical cycle</topic><topic>Biogeochemical cycles</topic><topic>Biogeochemistry</topic><topic>Brackishwater environment</topic><topic>China</topic><topic>Cluster analysis</topic><topic>Communities</topic><topic>Community structure</topic><topic>DNA</topic><topic>Ecosystem</topic><topic>Environmental factors</topic><topic>Environmental impact</topic><topic>Estuaries</topic><topic>Estuarine dynamics</topic><topic>Estuarine environments</topic><topic>Geologic Sediments - microbiology</topic><topic>Intertidal sediment</topic><topic>Microbial Consortia</topic><topic>Microorganisms</topic><topic>MiSeq sequencing</topic><topic>Nitrogen</topic><topic>Nucleotide sequence</topic><topic>Organic carbon</topic><topic>PCR</topic><topic>Phosphorus</topic><topic>River discharge</topic><topic>River flow</topic><topic>Rivers</topic><topic>Rivers - microbiology</topic><topic>Runoff</topic><topic>Salinity</topic><topic>Salinity effects</topic><topic>Sediment</topic><topic>Sediments</topic><topic>Sewerage</topic><topic>Studies</topic><topic>Sulfate reduction</topic><topic>Sulfate-reducing bacteria</topic><topic>Sulfates</topic><topic>Sulphate reduction</topic><topic>Total organic carbon</topic><topic>Yangtze Estuary</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Guo, Xing-pan</creatorcontrib><creatorcontrib>Lu, Da-pei</creatorcontrib><creatorcontrib>Niu, Zuo-shun</creatorcontrib><creatorcontrib>Feng, Jing-nan</creatorcontrib><creatorcontrib>Chen, Yu-ru</creatorcontrib><creatorcontrib>Tou, Fei-yun</creatorcontrib><creatorcontrib>Liu, Min</creatorcontrib><creatorcontrib>Yang, Yi</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Environment Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Oceanic Abstracts</collection><collection>Pollution Abstracts</collection><collection>Toxicology Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environment Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Marine pollution bulletin</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Guo, Xing-pan</au><au>Lu, Da-pei</au><au>Niu, Zuo-shun</au><au>Feng, Jing-nan</au><au>Chen, Yu-ru</au><au>Tou, Fei-yun</au><au>Liu, Min</au><au>Yang, Yi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Bacterial community structure in response to environmental impacts in the intertidal sediments along the Yangtze Estuary, China</atitle><jtitle>Marine pollution bulletin</jtitle><addtitle>Mar Pollut Bull</addtitle><date>2018-01</date><risdate>2018</risdate><volume>126</volume><spage>141</spage><epage>149</epage><pages>141-149</pages><issn>0025-326X</issn><eissn>1879-3363</eissn><abstract>This study was designed to investigate the characteristics of bacterial communities in intertidal sediments along the Yangtze Estuary and their responses to environmental factors. The results showed that bacterial abundance was significantly correlated with salinity, SO42− and total organic carbon, while bacterial diversity was significantly correlated with SO42− and total nitrogen. At different taxonomic levels, both the dominant taxa and their abundances varied among the eight samples, with Proteobacteria being the most dominant phylum in general. Cluster analysis revealed that the bacterial community structure was influenced by river runoff and sewerage discharge. Moreover, SO42−, salinity and total phosphorus were the vital environmental factors that influenced the bacterial community structure. Quantitative PCR and sequencing of sulphate-reducing bacteria indicated that the sulphate reduction process occurs frequently in intertidal sediments. These findings are important to understand the microbial ecology and biogeochemical cycles in estuarine environments.
•Bacterial community was investigated in the intertidal sediments along the Yangtze Estuary.•Proteobacteria was the most dominant phylum in general.•SO42−, salinity, and total phosphorus were the vital environmental factors that influenced the bacterial community structure.•The sulphate reduction process occurred frequently in the intertidal sediments.</abstract><cop>England</cop><pub>Elsevier Ltd</pub><pmid>29421081</pmid><doi>10.1016/j.marpolbul.2017.11.003</doi><tpages>9</tpages><orcidid>https://orcid.org/0000-0002-6794-2241</orcidid></addata></record> |
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subjects | Bacteria Bacteria - classification Bacterial community Biogeochemical cycle Biogeochemical cycles Biogeochemistry Brackishwater environment China Cluster analysis Communities Community structure DNA Ecosystem Environmental factors Environmental impact Estuaries Estuarine dynamics Estuarine environments Geologic Sediments - microbiology Intertidal sediment Microbial Consortia Microorganisms MiSeq sequencing Nitrogen Nucleotide sequence Organic carbon PCR Phosphorus River discharge River flow Rivers Rivers - microbiology Runoff Salinity Salinity effects Sediment Sediments Sewerage Studies Sulfate reduction Sulfate-reducing bacteria Sulfates Sulphate reduction Total organic carbon Yangtze Estuary |
title | Bacterial community structure in response to environmental impacts in the intertidal sediments along the Yangtze Estuary, China |
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