Contrasting beneficial and pathogenic microbial communities across consecutive cropping fields of greenhouse strawberry

Soil weakness across consecutive cropping fields can be partially explained by the changes in microbial community diversity and structure. Succession patterns and co-occurrence mechanisms of bacteria and fungi, especially beneficial or pathogenic memberships in continuous cropping strawberry fields...

Full description

Saved in:
Bibliographic Details
Published in:Applied microbiology and biotechnology 2018-07, Vol.102 (13), p.5717-5729
Main Authors: Huang, Ying, Xiao, Xu, Huang, Hongying, Jing, Jinquan, Zhao, Hejuan, Wang, Lin, Long, Xi-En
Format: Article
Language:English
Subjects:
Agricultural production
Bacteria
Berries
Biomedical and Life Sciences
Biotechnology
Communities
Continuous cropping
Correlation analysis
Ecological succession
Environmental aspects
Environmental Biotechnology
Fruits
Fungi
Fusarium
Fusarium oxysporum
Gene sequencing
Genetic aspects
Greenhouses
Life Sciences
Microbial activity
Microbial Genetics and Genomics
Microbiological research
Microbiology
Microbiomes
Microorganisms
Network analysis
Pathogens
pH effects
Physiological aspects
Plant diseases
Ribonucleic acid
RNA
rRNA 16S
Seasons
Soil chemistry
Soil microbiology
Soil moisture
Soil pH
Spacer
Strawberries
Trichoderma harzianum
Wilt
Winter
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
Description
Summary:Soil weakness across consecutive cropping fields can be partially explained by the changes in microbial community diversity and structure. Succession patterns and co-occurrence mechanisms of bacteria and fungi, especially beneficial or pathogenic memberships in continuous cropping strawberry fields and their response to edaphic factors remained unclear. In this study, Illumina sequencing of bacterial 16S ribosomal RNA and fungal internal transcribed spacer genes was applied in three time-course (1, 5, and 10 years) fields across spring and winter. Results showed that the richness and diversity of bacterial and fungal communities increased significantly ( p  
ISSN:0175-7598
1432-0614
DOI:10.1007/s00253-018-9013-6