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COX Inhibition Profiles and Molecular Docking Studies of the Lignan Hinokinin and Some Synthetic Derivatives
Encouraged by the anti‐inflammatory activity of hinokinin in vivo, which is also observed for the analogues dinitrohinokinin and diidrocubebin, herein we used in vitro and in silico methods to assess their selectivity profiles and predict their binding modes with Cyclooxygenases (COX‐1 and 2). The i...
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Published in: | Molecular informatics 2018-12, Vol.37 (12), p.e1800037-n/a |
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description | Encouraged by the anti‐inflammatory activity of hinokinin in vivo, which is also observed for the analogues dinitrohinokinin and diidrocubebin, herein we used in vitro and in silico methods to assess their selectivity profiles and predict their binding modes with Cyclooxygenases (COX‐1 and 2). The in vitro assays demonstrated dinitrohinokinin is about 13 times more selective for COX‐2 than for COX‐1, a similar profile observed for the drugs celecoxib (selective index ≈9) and meloxicam (selective index ≈11). Predictions of the binding modes suggested dinitrohinokinin interacts with COX‐2 very similarly to rofecoxib, exploring residues at the hydrophilic pocket of the enzyme that accessible to ligands only in this isoform. This lignan also interacts with COX‐1 in a similar mode to meloxicam, blocking the access of the substrate to the catalytic cleft. Therefore, dinitrohinokinin is a promising lead for the design of selective COX‐2 inhibitors. |
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The in vitro assays demonstrated dinitrohinokinin is about 13 times more selective for COX‐2 than for COX‐1, a similar profile observed for the drugs celecoxib (selective index ≈9) and meloxicam (selective index ≈11). Predictions of the binding modes suggested dinitrohinokinin interacts with COX‐2 very similarly to rofecoxib, exploring residues at the hydrophilic pocket of the enzyme that accessible to ligands only in this isoform. This lignan also interacts with COX‐1 in a similar mode to meloxicam, blocking the access of the substrate to the catalytic cleft. Therefore, dinitrohinokinin is a promising lead for the design of selective COX‐2 inhibitors.</description><identifier>ISSN: 1868-1743</identifier><identifier>EISSN: 1868-1751</identifier><identifier>DOI: 10.1002/minf.201800037</identifier><identifier>PMID: 30066986</identifier><language>eng</language><publisher>Germany: Wiley Subscription Services, Inc</publisher><subject>4-Butyrolactone - analogs & derivatives ; 4-Butyrolactone - chemistry ; 4-Butyrolactone - pharmacology ; Benzodioxoles - chemistry ; Benzodioxoles - pharmacology ; Binding ; Binding Sites ; Catalysis ; Celecoxib ; COX-2 inhibitors ; Cyclooxygenase 1 - metabolism ; Cyclooxygenase 2 - metabolism ; Cyclooxygenase Inhibitors - chemistry ; Cyclooxygenase Inhibitors - pharmacology ; Cyclooxygenases ; Humans ; In vitro methods and tests ; Inflammation ; Lactones - chemistry ; Lactones - pharmacology ; Lignans ; Lignans - chemistry ; Lignans - pharmacology ; Meloxicam ; Meloxicam - pharmacology ; Molecular Docking ; Molecular Docking Simulation ; Oxirreductases ; Protein Binding ; Quantitative Structure-Activity Relationship ; Rofecoxib ; Selectivity ; Substrate Specificity ; Substrates ; Sulfones - chemistry ; Sulfones - pharmacology</subject><ispartof>Molecular informatics, 2018-12, Vol.37 (12), p.e1800037-n/a</ispartof><rights>2018 Wiley‐VCH Verlag GmbH & Co. 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KGaA, Weinheim.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4107-d38fe614a928cbfafb93072cb4f2fd67e40b73c9f334fe77e81d076c03d6cb5c3</citedby><cites>FETCH-LOGICAL-c4107-d38fe614a928cbfafb93072cb4f2fd67e40b73c9f334fe77e81d076c03d6cb5c3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30066986$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Borges, Alexandre</creatorcontrib><creatorcontrib>Casoti, Rosana</creatorcontrib><creatorcontrib>e Silva, Marcio Luis Andrade</creatorcontrib><creatorcontrib>da Cunha, Nayane Larissa</creatorcontrib><creatorcontrib>da Rocha Pissurno, Ana Paula</creatorcontrib><creatorcontrib>Kawano, Daniel Fábio</creatorcontrib><creatorcontrib>da Silva de Laurentiz, Rosangela</creatorcontrib><title>COX Inhibition Profiles and Molecular Docking Studies of the Lignan Hinokinin and Some Synthetic Derivatives</title><title>Molecular informatics</title><addtitle>Mol Inform</addtitle><description>Encouraged by the anti‐inflammatory activity of hinokinin in vivo, which is also observed for the analogues dinitrohinokinin and diidrocubebin, herein we used in vitro and in silico methods to assess their selectivity profiles and predict their binding modes with Cyclooxygenases (COX‐1 and 2). The in vitro assays demonstrated dinitrohinokinin is about 13 times more selective for COX‐2 than for COX‐1, a similar profile observed for the drugs celecoxib (selective index ≈9) and meloxicam (selective index ≈11). Predictions of the binding modes suggested dinitrohinokinin interacts with COX‐2 very similarly to rofecoxib, exploring residues at the hydrophilic pocket of the enzyme that accessible to ligands only in this isoform. This lignan also interacts with COX‐1 in a similar mode to meloxicam, blocking the access of the substrate to the catalytic cleft. Therefore, dinitrohinokinin is a promising lead for the design of selective COX‐2 inhibitors.</description><subject>4-Butyrolactone - analogs & derivatives</subject><subject>4-Butyrolactone - chemistry</subject><subject>4-Butyrolactone - pharmacology</subject><subject>Benzodioxoles - chemistry</subject><subject>Benzodioxoles - pharmacology</subject><subject>Binding</subject><subject>Binding Sites</subject><subject>Catalysis</subject><subject>Celecoxib</subject><subject>COX-2 inhibitors</subject><subject>Cyclooxygenase 1 - metabolism</subject><subject>Cyclooxygenase 2 - metabolism</subject><subject>Cyclooxygenase Inhibitors - chemistry</subject><subject>Cyclooxygenase Inhibitors - pharmacology</subject><subject>Cyclooxygenases</subject><subject>Humans</subject><subject>In vitro methods and tests</subject><subject>Inflammation</subject><subject>Lactones - chemistry</subject><subject>Lactones - pharmacology</subject><subject>Lignans</subject><subject>Lignans - chemistry</subject><subject>Lignans - pharmacology</subject><subject>Meloxicam</subject><subject>Meloxicam - pharmacology</subject><subject>Molecular Docking</subject><subject>Molecular Docking Simulation</subject><subject>Oxirreductases</subject><subject>Protein Binding</subject><subject>Quantitative Structure-Activity Relationship</subject><subject>Rofecoxib</subject><subject>Selectivity</subject><subject>Substrate Specificity</subject><subject>Substrates</subject><subject>Sulfones - chemistry</subject><subject>Sulfones - pharmacology</subject><issn>1868-1743</issn><issn>1868-1751</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><recordid>eNqFkUtPGzEUhS1UBAjYdoksddNNgl9je5ZVgBIpPKS0UneWx2ODYcam9gxV_j0OgSB1w-pe6X7n6OocAL5iNMUIkdPeBzclCEuEEBU74ABLLidYVPjLdmd0Hxzn_IDWDOFC1ntgnyLEeS35AehmN3_gPNz7xg8-BnibovOdzVCHFl7Fzpqx0wmeRfPowx1cDmPryzU6ONxbuPB3QQd46UMsZx9eVcvYW7hchQIM3sAzm_yzHvyzzUdg1-ku2-O3eQh-X5z_ml1OFjc_57Mfi4lhGIlJS6WzHDNdE2kap11TUySIaZgjruXCMtQIampHKXNWCCtxiwQ3iLbcNJWhh-D7xvcpxb-jzYPqfTa263SwccyKIIkrJismCvrtP_QhjimU7xTBVUmM1Kwq1HRDmRRzTtapp-R7nVYKI7WuQq2rUNsqiuDkzXZsettu8ffgC1BvgH8l7dUndupqfn3xYf4CPGyVXQ</recordid><startdate>201812</startdate><enddate>201812</enddate><creator>Borges, Alexandre</creator><creator>Casoti, Rosana</creator><creator>e Silva, Marcio Luis Andrade</creator><creator>da Cunha, Nayane Larissa</creator><creator>da Rocha Pissurno, Ana Paula</creator><creator>Kawano, Daniel Fábio</creator><creator>da Silva de Laurentiz, Rosangela</creator><general>Wiley Subscription Services, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7TM</scope><scope>7U7</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>JQ2</scope><scope>K9.</scope><scope>P64</scope><scope>7X8</scope></search><sort><creationdate>201812</creationdate><title>COX Inhibition Profiles and Molecular Docking Studies of the Lignan Hinokinin and Some Synthetic Derivatives</title><author>Borges, Alexandre ; Casoti, Rosana ; e Silva, Marcio Luis Andrade ; da Cunha, Nayane Larissa ; da Rocha Pissurno, Ana Paula ; Kawano, Daniel Fábio ; da Silva de Laurentiz, Rosangela</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4107-d38fe614a928cbfafb93072cb4f2fd67e40b73c9f334fe77e81d076c03d6cb5c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>4-Butyrolactone - analogs & derivatives</topic><topic>4-Butyrolactone - chemistry</topic><topic>4-Butyrolactone - pharmacology</topic><topic>Benzodioxoles - chemistry</topic><topic>Benzodioxoles - pharmacology</topic><topic>Binding</topic><topic>Binding Sites</topic><topic>Catalysis</topic><topic>Celecoxib</topic><topic>COX-2 inhibitors</topic><topic>Cyclooxygenase 1 - metabolism</topic><topic>Cyclooxygenase 2 - metabolism</topic><topic>Cyclooxygenase Inhibitors - chemistry</topic><topic>Cyclooxygenase Inhibitors - pharmacology</topic><topic>Cyclooxygenases</topic><topic>Humans</topic><topic>In vitro methods and tests</topic><topic>Inflammation</topic><topic>Lactones - chemistry</topic><topic>Lactones - pharmacology</topic><topic>Lignans</topic><topic>Lignans - chemistry</topic><topic>Lignans - pharmacology</topic><topic>Meloxicam</topic><topic>Meloxicam - pharmacology</topic><topic>Molecular Docking</topic><topic>Molecular Docking Simulation</topic><topic>Oxirreductases</topic><topic>Protein Binding</topic><topic>Quantitative Structure-Activity Relationship</topic><topic>Rofecoxib</topic><topic>Selectivity</topic><topic>Substrate Specificity</topic><topic>Substrates</topic><topic>Sulfones - chemistry</topic><topic>Sulfones - pharmacology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Borges, Alexandre</creatorcontrib><creatorcontrib>Casoti, Rosana</creatorcontrib><creatorcontrib>e Silva, Marcio Luis Andrade</creatorcontrib><creatorcontrib>da Cunha, Nayane Larissa</creatorcontrib><creatorcontrib>da Rocha Pissurno, Ana Paula</creatorcontrib><creatorcontrib>Kawano, Daniel Fábio</creatorcontrib><creatorcontrib>da Silva de Laurentiz, Rosangela</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Toxicology Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Molecular informatics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Borges, Alexandre</au><au>Casoti, Rosana</au><au>e Silva, Marcio Luis Andrade</au><au>da Cunha, Nayane Larissa</au><au>da Rocha Pissurno, Ana Paula</au><au>Kawano, Daniel Fábio</au><au>da Silva de Laurentiz, Rosangela</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>COX Inhibition Profiles and Molecular Docking Studies of the Lignan Hinokinin and Some Synthetic Derivatives</atitle><jtitle>Molecular informatics</jtitle><addtitle>Mol Inform</addtitle><date>2018-12</date><risdate>2018</risdate><volume>37</volume><issue>12</issue><spage>e1800037</spage><epage>n/a</epage><pages>e1800037-n/a</pages><issn>1868-1743</issn><eissn>1868-1751</eissn><abstract>Encouraged by the anti‐inflammatory activity of hinokinin in vivo, which is also observed for the analogues dinitrohinokinin and diidrocubebin, herein we used in vitro and in silico methods to assess their selectivity profiles and predict their binding modes with Cyclooxygenases (COX‐1 and 2). The in vitro assays demonstrated dinitrohinokinin is about 13 times more selective for COX‐2 than for COX‐1, a similar profile observed for the drugs celecoxib (selective index ≈9) and meloxicam (selective index ≈11). Predictions of the binding modes suggested dinitrohinokinin interacts with COX‐2 very similarly to rofecoxib, exploring residues at the hydrophilic pocket of the enzyme that accessible to ligands only in this isoform. This lignan also interacts with COX‐1 in a similar mode to meloxicam, blocking the access of the substrate to the catalytic cleft. Therefore, dinitrohinokinin is a promising lead for the design of selective COX‐2 inhibitors.</abstract><cop>Germany</cop><pub>Wiley Subscription Services, Inc</pub><pmid>30066986</pmid><doi>10.1002/minf.201800037</doi><tpages>7</tpages></addata></record> |
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subjects | 4-Butyrolactone - analogs & derivatives 4-Butyrolactone - chemistry 4-Butyrolactone - pharmacology Benzodioxoles - chemistry Benzodioxoles - pharmacology Binding Binding Sites Catalysis Celecoxib COX-2 inhibitors Cyclooxygenase 1 - metabolism Cyclooxygenase 2 - metabolism Cyclooxygenase Inhibitors - chemistry Cyclooxygenase Inhibitors - pharmacology Cyclooxygenases Humans In vitro methods and tests Inflammation Lactones - chemistry Lactones - pharmacology Lignans Lignans - chemistry Lignans - pharmacology Meloxicam Meloxicam - pharmacology Molecular Docking Molecular Docking Simulation Oxirreductases Protein Binding Quantitative Structure-Activity Relationship Rofecoxib Selectivity Substrate Specificity Substrates Sulfones - chemistry Sulfones - pharmacology |
title | COX Inhibition Profiles and Molecular Docking Studies of the Lignan Hinokinin and Some Synthetic Derivatives |
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