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Evaluation of ecological network analysis: Validation of output
Ecological network analysis (ENA) is a modeling approach increasingly being used to evaluate food webs and provide an ecosystem-based approach to resource management. Unfortunately, validation of ENA output is rarely performed. This study represents part of a larger effort to critically evaluate ENA...
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Published in: | Ecological modelling 2008-01, Vol.210 (3), p.327-338 |
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description | Ecological network analysis (ENA) is a modeling approach increasingly being used to evaluate food webs and provide an ecosystem-based approach to resource management. Unfortunately, validation of ENA output is rarely performed. This study represents part of a larger effort to critically evaluate ENA. Here we validate ENA output using stable isotope analysis (SIA), and where validation is not met, determine the effects of modifying trophic networks to reflect validation.
Quantitative trophic networks representing four salt marsh ponds during late summer 2002 were constructed from an extensive field sampling program augmented by literature values. Ponds were used because they contain relatively simple food webs, have well defined boundaries, and allow for relatively complete sampling. SIA data (δ
13C, δ
15N, δ
34S) were used to validate effective trophic levels calculated by Ecopath for four separate networks, and carbon source estimates from NETWRK's total dependency matrix for four compartments in a single network.
Effective trophic levels calculated by Ecopath matched those from δ
15N data for three of the four networks. Mean differences of trophic levels between methods ranged from 0.12 (95% CI
=
0.27) to 0.34 (95% CI
=
0.35) in three networks, and 0.53 (95% CI
=
0.28) in the fourth. Agreement in carbon source estimates was determined graphically using ternary plots. Percent carbon from three sources (meiofauna, epiphytic algae, phytoplankton/POC) given in the total dependency matrix (NETWRK output) did not fall within the range given by stable isotope mixing models for three of four compartments. Modifications to reflect validation of carbon source estimates did not result in significant differences in ENA output. Lack of validation was often due to inherent differences in methods and assumptions imbedded in the models.
Our study highlights the need for feedback between model construction, analysis and validation in improving trophic networks. Moreover, validation allows the effect of uncertainty in trophic networks to be evaluated by quantifying the sensitivity of ENA output to modifications in the models. |
doi_str_mv | 10.1016/j.ecolmodel.2007.08.004 |
format | article |
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Quantitative trophic networks representing four salt marsh ponds during late summer 2002 were constructed from an extensive field sampling program augmented by literature values. Ponds were used because they contain relatively simple food webs, have well defined boundaries, and allow for relatively complete sampling. SIA data (δ
13C, δ
15N, δ
34S) were used to validate effective trophic levels calculated by Ecopath for four separate networks, and carbon source estimates from NETWRK's total dependency matrix for four compartments in a single network.
Effective trophic levels calculated by Ecopath matched those from δ
15N data for three of the four networks. Mean differences of trophic levels between methods ranged from 0.12 (95% CI
=
0.27) to 0.34 (95% CI
=
0.35) in three networks, and 0.53 (95% CI
=
0.28) in the fourth. Agreement in carbon source estimates was determined graphically using ternary plots. Percent carbon from three sources (meiofauna, epiphytic algae, phytoplankton/POC) given in the total dependency matrix (NETWRK output) did not fall within the range given by stable isotope mixing models for three of four compartments. Modifications to reflect validation of carbon source estimates did not result in significant differences in ENA output. Lack of validation was often due to inherent differences in methods and assumptions imbedded in the models.
Our study highlights the need for feedback between model construction, analysis and validation in improving trophic networks. Moreover, validation allows the effect of uncertainty in trophic networks to be evaluated by quantifying the sensitivity of ENA output to modifications in the models.</description><identifier>ISSN: 0304-3800</identifier><identifier>EISSN: 1872-7026</identifier><identifier>DOI: 10.1016/j.ecolmodel.2007.08.004</identifier><identifier>CODEN: ECMODT</identifier><language>eng</language><publisher>Amsterdam: Elsevier B.V</publisher><subject>Animal, plant and microbial ecology ; Applied ecology ; Biological and medical sciences ; Conservation, protection and management of environment and wildlife ; Ecological network analysis ; Ecopath ; Ecosystem-based management ; Food web ; Fundamental and applied biological sciences. Psychology ; General aspects ; General aspects. Techniques ; Methods and techniques (sampling, tagging, trapping, modelling...) ; Model validation ; NETWRK ; Stable isotopes ; Trophic network</subject><ispartof>Ecological modelling, 2008-01, Vol.210 (3), p.327-338</ispartof><rights>2007 Elsevier B.V.</rights><rights>2008 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c407t-9186633c416efbdc45543280e0aababe15dd19953f0d7ebe283bf8b81c013513</citedby><cites>FETCH-LOGICAL-c407t-9186633c416efbdc45543280e0aababe15dd19953f0d7ebe283bf8b81c013513</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=19972580$$DView record in Pascal Francis$$Hfree_for_read</backlink></links><search><creatorcontrib>Dame, James K.</creatorcontrib><creatorcontrib>Christian, Robert R.</creatorcontrib><title>Evaluation of ecological network analysis: Validation of output</title><title>Ecological modelling</title><description>Ecological network analysis (ENA) is a modeling approach increasingly being used to evaluate food webs and provide an ecosystem-based approach to resource management. Unfortunately, validation of ENA output is rarely performed. This study represents part of a larger effort to critically evaluate ENA. Here we validate ENA output using stable isotope analysis (SIA), and where validation is not met, determine the effects of modifying trophic networks to reflect validation.
Quantitative trophic networks representing four salt marsh ponds during late summer 2002 were constructed from an extensive field sampling program augmented by literature values. Ponds were used because they contain relatively simple food webs, have well defined boundaries, and allow for relatively complete sampling. SIA data (δ
13C, δ
15N, δ
34S) were used to validate effective trophic levels calculated by Ecopath for four separate networks, and carbon source estimates from NETWRK's total dependency matrix for four compartments in a single network.
Effective trophic levels calculated by Ecopath matched those from δ
15N data for three of the four networks. Mean differences of trophic levels between methods ranged from 0.12 (95% CI
=
0.27) to 0.34 (95% CI
=
0.35) in three networks, and 0.53 (95% CI
=
0.28) in the fourth. Agreement in carbon source estimates was determined graphically using ternary plots. Percent carbon from three sources (meiofauna, epiphytic algae, phytoplankton/POC) given in the total dependency matrix (NETWRK output) did not fall within the range given by stable isotope mixing models for three of four compartments. Modifications to reflect validation of carbon source estimates did not result in significant differences in ENA output. Lack of validation was often due to inherent differences in methods and assumptions imbedded in the models.
Our study highlights the need for feedback between model construction, analysis and validation in improving trophic networks. Moreover, validation allows the effect of uncertainty in trophic networks to be evaluated by quantifying the sensitivity of ENA output to modifications in the models.</description><subject>Animal, plant and microbial ecology</subject><subject>Applied ecology</subject><subject>Biological and medical sciences</subject><subject>Conservation, protection and management of environment and wildlife</subject><subject>Ecological network analysis</subject><subject>Ecopath</subject><subject>Ecosystem-based management</subject><subject>Food web</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>General aspects</subject><subject>General aspects. Techniques</subject><subject>Methods and techniques (sampling, tagging, trapping, modelling...)</subject><subject>Model validation</subject><subject>NETWRK</subject><subject>Stable isotopes</subject><subject>Trophic network</subject><issn>0304-3800</issn><issn>1872-7026</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><recordid>eNqFkDtPwzAURi0EEqXwG8gCW8K1nYfDgqqqPKRKLBWr5Tg3yMWNi50U9d-T0qqMne5y7vmkQ8gthYQCzR-WCWpnV65GmzCAIgGRAKRnZERFweICWH5ORsAhjbkAuCRXISwBgDLBRuRptlG2V51xbeSaaKdyn0YrG7XY_Tj_FalW2W0w4TH6UNbUR9T13brvrslFo2zAm8Mdk8XzbDF9jefvL2_TyTzWKRRdXFKR55zrlObYVLVOsyzlTACCUpWqkGZ1Tcsy4w3UBVbIBK8aUQmqgfKM8jG532vX3n33GDq5MkGjtapF1wfJYPDTND8J0lTkTPwZiz2ovQvBYyPX3qyU30oKchdWLuUxrNyFlSDkEHb4vDtMqDCEarxqtQn_72VZsEzAwE32HA5dNga9DNpgq7E2HnUna2dObv0CjLKStg</recordid><startdate>20080124</startdate><enddate>20080124</enddate><creator>Dame, James K.</creator><creator>Christian, Robert R.</creator><general>Elsevier B.V</general><general>Elsevier</general><scope>IQODW</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7ST</scope><scope>C1K</scope><scope>SOI</scope><scope>7SN</scope><scope>M7N</scope></search><sort><creationdate>20080124</creationdate><title>Evaluation of ecological network analysis: Validation of output</title><author>Dame, James K. ; Christian, Robert R.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c407t-9186633c416efbdc45543280e0aababe15dd19953f0d7ebe283bf8b81c013513</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>Animal, plant and microbial ecology</topic><topic>Applied ecology</topic><topic>Biological and medical sciences</topic><topic>Conservation, protection and management of environment and wildlife</topic><topic>Ecological network analysis</topic><topic>Ecopath</topic><topic>Ecosystem-based management</topic><topic>Food web</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>General aspects</topic><topic>General aspects. Techniques</topic><topic>Methods and techniques (sampling, tagging, trapping, modelling...)</topic><topic>Model validation</topic><topic>NETWRK</topic><topic>Stable isotopes</topic><topic>Trophic network</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Dame, James K.</creatorcontrib><creatorcontrib>Christian, Robert R.</creatorcontrib><collection>Pascal-Francis</collection><collection>CrossRef</collection><collection>Environment Abstracts</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Environment Abstracts</collection><collection>Ecology Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><jtitle>Ecological modelling</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Dame, James K.</au><au>Christian, Robert R.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Evaluation of ecological network analysis: Validation of output</atitle><jtitle>Ecological modelling</jtitle><date>2008-01-24</date><risdate>2008</risdate><volume>210</volume><issue>3</issue><spage>327</spage><epage>338</epage><pages>327-338</pages><issn>0304-3800</issn><eissn>1872-7026</eissn><coden>ECMODT</coden><abstract>Ecological network analysis (ENA) is a modeling approach increasingly being used to evaluate food webs and provide an ecosystem-based approach to resource management. Unfortunately, validation of ENA output is rarely performed. This study represents part of a larger effort to critically evaluate ENA. Here we validate ENA output using stable isotope analysis (SIA), and where validation is not met, determine the effects of modifying trophic networks to reflect validation.
Quantitative trophic networks representing four salt marsh ponds during late summer 2002 were constructed from an extensive field sampling program augmented by literature values. Ponds were used because they contain relatively simple food webs, have well defined boundaries, and allow for relatively complete sampling. SIA data (δ
13C, δ
15N, δ
34S) were used to validate effective trophic levels calculated by Ecopath for four separate networks, and carbon source estimates from NETWRK's total dependency matrix for four compartments in a single network.
Effective trophic levels calculated by Ecopath matched those from δ
15N data for three of the four networks. Mean differences of trophic levels between methods ranged from 0.12 (95% CI
=
0.27) to 0.34 (95% CI
=
0.35) in three networks, and 0.53 (95% CI
=
0.28) in the fourth. Agreement in carbon source estimates was determined graphically using ternary plots. Percent carbon from three sources (meiofauna, epiphytic algae, phytoplankton/POC) given in the total dependency matrix (NETWRK output) did not fall within the range given by stable isotope mixing models for three of four compartments. Modifications to reflect validation of carbon source estimates did not result in significant differences in ENA output. Lack of validation was often due to inherent differences in methods and assumptions imbedded in the models.
Our study highlights the need for feedback between model construction, analysis and validation in improving trophic networks. Moreover, validation allows the effect of uncertainty in trophic networks to be evaluated by quantifying the sensitivity of ENA output to modifications in the models.</abstract><cop>Amsterdam</cop><pub>Elsevier B.V</pub><doi>10.1016/j.ecolmodel.2007.08.004</doi><tpages>12</tpages></addata></record> |
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subjects | Animal, plant and microbial ecology Applied ecology Biological and medical sciences Conservation, protection and management of environment and wildlife Ecological network analysis Ecopath Ecosystem-based management Food web Fundamental and applied biological sciences. Psychology General aspects General aspects. Techniques Methods and techniques (sampling, tagging, trapping, modelling...) Model validation NETWRK Stable isotopes Trophic network |
title | Evaluation of ecological network analysis: Validation of output |
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