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Allelic frequency of PCR-RFLP type of the BoLA-DRB3 in Japanese Holstein herds and the relation to mastitis
Holstein Cows (n=702) from 26 dairy herds in the Tama area of Tokyo, Japan were examined for polymorphisms of the BOLA-DRB3 allele using a PCR-RFLP method. Twenty alleles were observed and allelic frequencies ranged from 1% to 20.3%. Nine alleles (DRB3.2*24, *16, *8, *23, *22, *3, *11, *10 and *7 in...
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Published in: | Animal science journal 2008-08, Vol.79 (4), p.409-416 |
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description | Holstein Cows (n=702) from 26 dairy herds in the Tama area of Tokyo, Japan were examined for polymorphisms of the BOLA-DRB3 allele using a PCR-RFLP method. Twenty alleles were observed and allelic frequencies ranged from 1% to 20.3%. Nine alleles (DRB3.2*24, *16, *8, *23, *22, *3, *11, *10 and *7 in order) constituted 90.0% of all alleles. Somatic cell counts (SCC) were used to classify healthy (group 1), mastitis (group 2) and suspected (group 3) cows. Frequencies of DRB3.2*11 and DRB3.2*23 were slightly higher in group 1 than in group 2, whereas, frequencies of DRB3.2*8 and DRB3.2*16 were slightly higher in group 2 than in group 1. However, none of the differences in frequencies between the two groups were statistically significant. For combinations of alleles, frequencies of DRB3.2*8/*23 (P0.1) and DRB3.2*16/*24 (P0.05) were significantly higher in group 2 than in group 1, and their odds ratios were 2.1, 2.5, respectively. However, there were no significant differences between genotypes in their effects for SCC. On the other hand, frequency of DRB3.2*23/*23 including combinations of DRB3.2*23 with minor alleles was significantly higher in group 1 than in group 2 (P0.01 ), and the odds ratio was 0.3. Therefore, it was considered that mastitis resistance or susceptibility of cows may vary with the combination of BoLA-DRB3 alleles. |
doi_str_mv | 10.1111/j.1740-0929.2008.00545.x |
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Twenty alleles were observed and allelic frequencies ranged from 1% to 20.3%. Nine alleles (DRB3.2*24, *16, *8, *23, *22, *3, *11, *10 and *7 in order) constituted 90.0% of all alleles. Somatic cell counts (SCC) were used to classify healthy (group 1), mastitis (group 2) and suspected (group 3) cows. Frequencies of DRB3.2*11 and DRB3.2*23 were slightly higher in group 1 than in group 2, whereas, frequencies of DRB3.2*8 and DRB3.2*16 were slightly higher in group 2 than in group 1. However, none of the differences in frequencies between the two groups were statistically significant. For combinations of alleles, frequencies of DRB3.2*8/*23 (P0.1) and DRB3.2*16/*24 (P0.05) were significantly higher in group 2 than in group 1, and their odds ratios were 2.1, 2.5, respectively. However, there were no significant differences between genotypes in their effects for SCC. On the other hand, frequency of DRB3.2*23/*23 including combinations of DRB3.2*23 with minor alleles was significantly higher in group 1 than in group 2 (P0.01 ), and the odds ratio was 0.3. Therefore, it was considered that mastitis resistance or susceptibility of cows may vary with the combination of BoLA-DRB3 alleles.</description><identifier>ISSN: 1344-3941</identifier><identifier>EISSN: 1740-0929</identifier><identifier>DOI: 10.1111/j.1740-0929.2008.00545.x</identifier><language>eng</language><publisher>Melbourne, Australia: Blackwell Publishing Asia</publisher><subject>BoLA-DRB3 ; Cattle ; Cellular biology ; CONTEO DE CELULAS SOMATICAS ; DAIRY COWS ; GENE ; GENES ; Genetics ; MAMMITE ; MASTITIS ; METHODE STATISTIQUE ; METODOS ESTADISTICOS ; NUMERATION CELLULAIRE SOMATIQUE ; PCR ; PCR-RFLP ; POLIMORFISMO ; POLYMORPHISM ; POLYMORPHISME ; Ratios ; somatic cell ; SOMATIC CELL COUNT ; STATISTICAL METHODS ; VACAS LECHERAS ; VACHE LAITIERE ; Zoology</subject><ispartof>Animal science journal, 2008-08, Vol.79 (4), p.409-416</ispartof><rights>2008 The Authors. Journal compilation © 2008 Japanese Society of Animal Science</rights><rights>Journal compilation © 2008 Japanese Society of Animal Science</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4835-a24759453cdaa3eb8b4ac77d978cbf7e0aded72ba9df3ea1b10b7c365e800db93</citedby><cites>FETCH-LOGICAL-c4835-a24759453cdaa3eb8b4ac77d978cbf7e0aded72ba9df3ea1b10b7c365e800db93</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids></links><search><creatorcontrib>Yoshida, T.(Nippon Veterinary and Life Science Univ., Musashino, Tokyo (Japan))</creatorcontrib><creatorcontrib>Mukoyama, H</creatorcontrib><creatorcontrib>Furuta, H</creatorcontrib><creatorcontrib>Holmes, C.W</creatorcontrib><creatorcontrib>Kosugiyama, M</creatorcontrib><creatorcontrib>Tomogane, H</creatorcontrib><title>Allelic frequency of PCR-RFLP type of the BoLA-DRB3 in Japanese Holstein herds and the relation to mastitis</title><title>Animal science journal</title><description>Holstein Cows (n=702) from 26 dairy herds in the Tama area of Tokyo, Japan were examined for polymorphisms of the BOLA-DRB3 allele using a PCR-RFLP method. Twenty alleles were observed and allelic frequencies ranged from 1% to 20.3%. Nine alleles (DRB3.2*24, *16, *8, *23, *22, *3, *11, *10 and *7 in order) constituted 90.0% of all alleles. Somatic cell counts (SCC) were used to classify healthy (group 1), mastitis (group 2) and suspected (group 3) cows. Frequencies of DRB3.2*11 and DRB3.2*23 were slightly higher in group 1 than in group 2, whereas, frequencies of DRB3.2*8 and DRB3.2*16 were slightly higher in group 2 than in group 1. However, none of the differences in frequencies between the two groups were statistically significant. For combinations of alleles, frequencies of DRB3.2*8/*23 (P0.1) and DRB3.2*16/*24 (P0.05) were significantly higher in group 2 than in group 1, and their odds ratios were 2.1, 2.5, respectively. However, there were no significant differences between genotypes in their effects for SCC. On the other hand, frequency of DRB3.2*23/*23 including combinations of DRB3.2*23 with minor alleles was significantly higher in group 1 than in group 2 (P0.01 ), and the odds ratio was 0.3. Therefore, it was considered that mastitis resistance or susceptibility of cows may vary with the combination of BoLA-DRB3 alleles.</description><subject>BoLA-DRB3</subject><subject>Cattle</subject><subject>Cellular biology</subject><subject>CONTEO DE CELULAS SOMATICAS</subject><subject>DAIRY COWS</subject><subject>GENE</subject><subject>GENES</subject><subject>Genetics</subject><subject>MAMMITE</subject><subject>MASTITIS</subject><subject>METHODE STATISTIQUE</subject><subject>METODOS ESTADISTICOS</subject><subject>NUMERATION CELLULAIRE SOMATIQUE</subject><subject>PCR</subject><subject>PCR-RFLP</subject><subject>POLIMORFISMO</subject><subject>POLYMORPHISM</subject><subject>POLYMORPHISME</subject><subject>Ratios</subject><subject>somatic cell</subject><subject>SOMATIC CELL COUNT</subject><subject>STATISTICAL METHODS</subject><subject>VACAS LECHERAS</subject><subject>VACHE LAITIERE</subject><subject>Zoology</subject><issn>1344-3941</issn><issn>1740-0929</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><recordid>eNqNkc1u2zAQhIWiAZomfYQCRA-9SSFFSqSAXhw3iWMIqeH-BOhlQUmrho4suqSM2m9fKgpy6Km8cLH8ZrGciSLCaMLCudgkTAoa0yItkpRSlVCaiSw5vIpOXx5eh5oLEfNCsDfRW-83lDJZ0Ow0epx1HXamJq3D33vs6yOxLVnN1_H6ulyR4bjDsTE8ILm05Sz-vL7kxPRkqXe6R49kYTs_YOg8oGs80X3zBDvs9GBsTwZLttoPZjD-PDppdefx3fN9Fn2_vvo2X8Tll5vb-ayMa6F4FutUyKwQGa8brTlWqhK6lrIppKqrViLVDTYyrXTRtBw1qxitZM3zDBWlTVXws-jjNHfnbPiTH2BrfI1dFza2ew8pVYqnuQjgh3_Ajd27PuwGKVN5pgIXIDVBtbPeO2xh58xWuyMwCmMEsIHRaRidhjECeIoADkH6aZL-MR0e_1sHs6_LUAR5PMlNcPjwItfuEXLJZQb3dzdwV_64XxTsJywD_37iW21B_3LGw3I1DqY0lyznfwFiX6Oy</recordid><startdate>200808</startdate><enddate>200808</enddate><creator>Yoshida, T.(Nippon Veterinary and Life Science Univ., Musashino, Tokyo (Japan))</creator><creator>Mukoyama, H</creator><creator>Furuta, H</creator><creator>Holmes, C.W</creator><creator>Kosugiyama, M</creator><creator>Tomogane, H</creator><general>Blackwell Publishing Asia</general><general>Blackwell Publishing Ltd</general><scope>FBQ</scope><scope>BSCLL</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7T7</scope><scope>7TK</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>200808</creationdate><title>Allelic frequency of PCR-RFLP type of the BoLA-DRB3 in Japanese Holstein herds and the relation to mastitis</title><author>Yoshida, T.(Nippon Veterinary and Life Science Univ., Musashino, Tokyo (Japan)) ; Mukoyama, H ; Furuta, H ; Holmes, C.W ; Kosugiyama, M ; Tomogane, H</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4835-a24759453cdaa3eb8b4ac77d978cbf7e0aded72ba9df3ea1b10b7c365e800db93</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>BoLA-DRB3</topic><topic>Cattle</topic><topic>Cellular biology</topic><topic>CONTEO DE CELULAS SOMATICAS</topic><topic>DAIRY COWS</topic><topic>GENE</topic><topic>GENES</topic><topic>Genetics</topic><topic>MAMMITE</topic><topic>MASTITIS</topic><topic>METHODE STATISTIQUE</topic><topic>METODOS ESTADISTICOS</topic><topic>NUMERATION CELLULAIRE SOMATIQUE</topic><topic>PCR</topic><topic>PCR-RFLP</topic><topic>POLIMORFISMO</topic><topic>POLYMORPHISM</topic><topic>POLYMORPHISME</topic><topic>Ratios</topic><topic>somatic cell</topic><topic>SOMATIC CELL COUNT</topic><topic>STATISTICAL METHODS</topic><topic>VACAS LECHERAS</topic><topic>VACHE LAITIERE</topic><topic>Zoology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yoshida, T.(Nippon Veterinary and Life Science Univ., Musashino, Tokyo (Japan))</creatorcontrib><creatorcontrib>Mukoyama, H</creatorcontrib><creatorcontrib>Furuta, H</creatorcontrib><creatorcontrib>Holmes, C.W</creatorcontrib><creatorcontrib>Kosugiyama, M</creatorcontrib><creatorcontrib>Tomogane, H</creatorcontrib><collection>AGRIS</collection><collection>Istex</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Animal science journal</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yoshida, T.(Nippon Veterinary and Life Science Univ., Musashino, Tokyo (Japan))</au><au>Mukoyama, H</au><au>Furuta, H</au><au>Holmes, C.W</au><au>Kosugiyama, M</au><au>Tomogane, H</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Allelic frequency of PCR-RFLP type of the BoLA-DRB3 in Japanese Holstein herds and the relation to mastitis</atitle><jtitle>Animal science journal</jtitle><date>2008-08</date><risdate>2008</risdate><volume>79</volume><issue>4</issue><spage>409</spage><epage>416</epage><pages>409-416</pages><issn>1344-3941</issn><eissn>1740-0929</eissn><abstract>Holstein Cows (n=702) from 26 dairy herds in the Tama area of Tokyo, Japan were examined for polymorphisms of the BOLA-DRB3 allele using a PCR-RFLP method. Twenty alleles were observed and allelic frequencies ranged from 1% to 20.3%. Nine alleles (DRB3.2*24, *16, *8, *23, *22, *3, *11, *10 and *7 in order) constituted 90.0% of all alleles. Somatic cell counts (SCC) were used to classify healthy (group 1), mastitis (group 2) and suspected (group 3) cows. Frequencies of DRB3.2*11 and DRB3.2*23 were slightly higher in group 1 than in group 2, whereas, frequencies of DRB3.2*8 and DRB3.2*16 were slightly higher in group 2 than in group 1. However, none of the differences in frequencies between the two groups were statistically significant. For combinations of alleles, frequencies of DRB3.2*8/*23 (P0.1) and DRB3.2*16/*24 (P0.05) were significantly higher in group 2 than in group 1, and their odds ratios were 2.1, 2.5, respectively. However, there were no significant differences between genotypes in their effects for SCC. On the other hand, frequency of DRB3.2*23/*23 including combinations of DRB3.2*23 with minor alleles was significantly higher in group 1 than in group 2 (P0.01 ), and the odds ratio was 0.3. Therefore, it was considered that mastitis resistance or susceptibility of cows may vary with the combination of BoLA-DRB3 alleles.</abstract><cop>Melbourne, Australia</cop><pub>Blackwell Publishing Asia</pub><doi>10.1111/j.1740-0929.2008.00545.x</doi><tpages>8</tpages></addata></record> |
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subjects | BoLA-DRB3 Cattle Cellular biology CONTEO DE CELULAS SOMATICAS DAIRY COWS GENE GENES Genetics MAMMITE MASTITIS METHODE STATISTIQUE METODOS ESTADISTICOS NUMERATION CELLULAIRE SOMATIQUE PCR PCR-RFLP POLIMORFISMO POLYMORPHISM POLYMORPHISME Ratios somatic cell SOMATIC CELL COUNT STATISTICAL METHODS VACAS LECHERAS VACHE LAITIERE Zoology |
title | Allelic frequency of PCR-RFLP type of the BoLA-DRB3 in Japanese Holstein herds and the relation to mastitis |
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