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Rapid diagnosis of Zika virus through saliva and urine by Loop-mediated isothermal amplification (LAMP)
Background: Zika virus (ZIKV) is a single-stranded RNA virus and member of the Flaviviridae family. Recent studies have reported that saliva can be an important alternative to detect ZIKV. Saliva requires less processing than blood greatly simplifying the assay. Loop-mediated Isothermal Amplificatio...
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Published in: | Journal of oral microbiology 2018-01, Vol.10 (1), p.1510712-6 |
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description | Background: Zika virus (ZIKV) is a single-stranded RNA virus and member of the Flaviviridae family. Recent studies have reported that saliva can be an important alternative to detect ZIKV. Saliva requires less processing than blood greatly simplifying the assay. Loop-mediated Isothermal Amplification (LAMP) is a rapid assay that detects nucleic acids, including ZIKV RNA.
Aim: The aim of this study was to evaluate the efficacy of saliva and urine to diagnose ZIKV infection in subjects during the acute phase, through ZIKV RNA detection by LAMP.
Method: A total of 131 samples (68 saliva and 63 urine samples) from 69 subjects in the acute phase of ZIKV infection, and confirmed positive for ZIKV by blood analysis through real time-PCR, were collected and analyzed by Reverse Transcriptase Loop-mediated Isothermal Amplification (RT-LAMP).
Results: From the 68 saliva samples, 45 (66.2%) were positive for ZIKV with an average time to positivity (Tp) of 13.5 min, and from the 63 urine samples, 25 (39.7%) were positive with the average Tp of 15.8 min. Saliva detected more samples (p = 0.0042) and had faster Tp (p = 0.0176) as compared with urine.
Conclusion: Saliva proved to be a feasible alternative to diagnose ZIKV infection during the acute phase by LAMP. |
doi_str_mv | 10.1080/20002297.2018.1510712 |
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Aim: The aim of this study was to evaluate the efficacy of saliva and urine to diagnose ZIKV infection in subjects during the acute phase, through ZIKV RNA detection by LAMP.
Method: A total of 131 samples (68 saliva and 63 urine samples) from 69 subjects in the acute phase of ZIKV infection, and confirmed positive for ZIKV by blood analysis through real time-PCR, were collected and analyzed by Reverse Transcriptase Loop-mediated Isothermal Amplification (RT-LAMP).
Results: From the 68 saliva samples, 45 (66.2%) were positive for ZIKV with an average time to positivity (Tp) of 13.5 min, and from the 63 urine samples, 25 (39.7%) were positive with the average Tp of 15.8 min. Saliva detected more samples (p = 0.0042) and had faster Tp (p = 0.0176) as compared with urine.
Conclusion: Saliva proved to be a feasible alternative to diagnose ZIKV infection during the acute phase by LAMP.</description><identifier>ISSN: 2000-2297</identifier><identifier>EISSN: 2000-2297</identifier><identifier>DOI: 10.1080/20002297.2018.1510712</identifier><identifier>PMID: 30202506</identifier><language>eng</language><publisher>United States: Taylor & Francis</publisher><subject>Blood ; Dengue ; Dentistry ; Flavivirus ; Guillain-Barre syndrome ; infection ; Infections ; LAMP ; Nucleic acids ; Original ; Polymerase chain reaction ; Ribonucleic acid ; RNA ; RNA viruses ; RNA-directed DNA polymerase ; Saliva ; Studies ; Thermal cycling ; Urine ; Vector-borne diseases ; virology ; Viruses ; Zika ; Zika virus</subject><ispartof>Journal of oral microbiology, 2018-01, Vol.10 (1), p.1510712-6</ispartof><rights>2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2018</rights><rights>Copyright Taylor & Francis Ltd. 2018</rights><rights>2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. This work is licensed under the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2018 The Author(s)</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c590t-4ca28dc3eb24354b9e7a10a7c43e5f2907c1481590bfa83779b6426d67410c7a3</citedby><cites>FETCH-LOGICAL-c590t-4ca28dc3eb24354b9e7a10a7c43e5f2907c1481590bfa83779b6426d67410c7a3</cites><orcidid>0000-0001-5516-5177 ; 0000-0003-4019-376X ; 0000-0002-1842-9521 ; 0000-0002-2159-507X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2171121349/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2171121349?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25753,27502,27924,27925,37012,37013,44590,53791,53793,59143,59144,75126</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30202506$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Castro, Talita</creatorcontrib><creatorcontrib>Sabalza, Maite</creatorcontrib><creatorcontrib>Barber, Cheryl</creatorcontrib><creatorcontrib>Abrams, William</creatorcontrib><creatorcontrib>Da Costa, Antonio Charlys</creatorcontrib><creatorcontrib>De Pádua Milagres, Flavio Augusto</creatorcontrib><creatorcontrib>Braz-Silva, Paulo Henrique</creatorcontrib><creatorcontrib>Malamud, Daniel</creatorcontrib><creatorcontrib>Gallottini, Marina</creatorcontrib><title>Rapid diagnosis of Zika virus through saliva and urine by Loop-mediated isothermal amplification (LAMP)</title><title>Journal of oral microbiology</title><addtitle>J Oral Microbiol</addtitle><description>Background: Zika virus (ZIKV) is a single-stranded RNA virus and member of the Flaviviridae family. Recent studies have reported that saliva can be an important alternative to detect ZIKV. Saliva requires less processing than blood greatly simplifying the assay. Loop-mediated Isothermal Amplification (LAMP) is a rapid assay that detects nucleic acids, including ZIKV RNA.
Aim: The aim of this study was to evaluate the efficacy of saliva and urine to diagnose ZIKV infection in subjects during the acute phase, through ZIKV RNA detection by LAMP.
Method: A total of 131 samples (68 saliva and 63 urine samples) from 69 subjects in the acute phase of ZIKV infection, and confirmed positive for ZIKV by blood analysis through real time-PCR, were collected and analyzed by Reverse Transcriptase Loop-mediated Isothermal Amplification (RT-LAMP).
Results: From the 68 saliva samples, 45 (66.2%) were positive for ZIKV with an average time to positivity (Tp) of 13.5 min, and from the 63 urine samples, 25 (39.7%) were positive with the average Tp of 15.8 min. Saliva detected more samples (p = 0.0042) and had faster Tp (p = 0.0176) as compared with urine.
Conclusion: Saliva proved to be a feasible alternative to diagnose ZIKV infection during the acute phase by LAMP.</description><subject>Blood</subject><subject>Dengue</subject><subject>Dentistry</subject><subject>Flavivirus</subject><subject>Guillain-Barre syndrome</subject><subject>infection</subject><subject>Infections</subject><subject>LAMP</subject><subject>Nucleic acids</subject><subject>Original</subject><subject>Polymerase chain reaction</subject><subject>Ribonucleic acid</subject><subject>RNA</subject><subject>RNA viruses</subject><subject>RNA-directed DNA polymerase</subject><subject>Saliva</subject><subject>Studies</subject><subject>Thermal cycling</subject><subject>Urine</subject><subject>Vector-borne diseases</subject><subject>virology</subject><subject>Viruses</subject><subject>Zika</subject><subject>Zika 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diagnosis of Zika virus through saliva and urine by Loop-mediated isothermal amplification (LAMP)</title><author>Castro, Talita ; Sabalza, Maite ; Barber, Cheryl ; Abrams, William ; Da Costa, Antonio Charlys ; De Pádua Milagres, Flavio Augusto ; Braz-Silva, Paulo Henrique ; Malamud, Daniel ; Gallottini, Marina</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c590t-4ca28dc3eb24354b9e7a10a7c43e5f2907c1481590bfa83779b6426d67410c7a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Blood</topic><topic>Dengue</topic><topic>Dentistry</topic><topic>Flavivirus</topic><topic>Guillain-Barre syndrome</topic><topic>infection</topic><topic>Infections</topic><topic>LAMP</topic><topic>Nucleic acids</topic><topic>Original</topic><topic>Polymerase chain reaction</topic><topic>Ribonucleic acid</topic><topic>RNA</topic><topic>RNA viruses</topic><topic>RNA-directed DNA polymerase</topic><topic>Saliva</topic><topic>Studies</topic><topic>Thermal cycling</topic><topic>Urine</topic><topic>Vector-borne diseases</topic><topic>virology</topic><topic>Viruses</topic><topic>Zika</topic><topic>Zika virus</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Castro, Talita</creatorcontrib><creatorcontrib>Sabalza, Maite</creatorcontrib><creatorcontrib>Barber, Cheryl</creatorcontrib><creatorcontrib>Abrams, William</creatorcontrib><creatorcontrib>Da Costa, Antonio Charlys</creatorcontrib><creatorcontrib>De Pádua Milagres, Flavio Augusto</creatorcontrib><creatorcontrib>Braz-Silva, Paulo Henrique</creatorcontrib><creatorcontrib>Malamud, Daniel</creatorcontrib><creatorcontrib>Gallottini, Marina</creatorcontrib><collection>Taylor & Francis Open Access(OpenAccess)</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Calcium & Calcified Tissue 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Central China</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>Directory of Open Access Journals</collection><jtitle>Journal of oral microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Castro, Talita</au><au>Sabalza, Maite</au><au>Barber, Cheryl</au><au>Abrams, William</au><au>Da Costa, Antonio Charlys</au><au>De Pádua Milagres, Flavio Augusto</au><au>Braz-Silva, Paulo Henrique</au><au>Malamud, Daniel</au><au>Gallottini, Marina</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Rapid diagnosis of Zika virus through saliva and urine by Loop-mediated isothermal amplification (LAMP)</atitle><jtitle>Journal of oral microbiology</jtitle><addtitle>J Oral Microbiol</addtitle><date>2018-01-01</date><risdate>2018</risdate><volume>10</volume><issue>1</issue><spage>1510712</spage><epage>6</epage><pages>1510712-6</pages><issn>2000-2297</issn><eissn>2000-2297</eissn><abstract>Background: Zika virus (ZIKV) is a single-stranded RNA virus and member of the Flaviviridae family. Recent studies have reported that saliva can be an important alternative to detect ZIKV. Saliva requires less processing than blood greatly simplifying the assay. Loop-mediated Isothermal Amplification (LAMP) is a rapid assay that detects nucleic acids, including ZIKV RNA.
Aim: The aim of this study was to evaluate the efficacy of saliva and urine to diagnose ZIKV infection in subjects during the acute phase, through ZIKV RNA detection by LAMP.
Method: A total of 131 samples (68 saliva and 63 urine samples) from 69 subjects in the acute phase of ZIKV infection, and confirmed positive for ZIKV by blood analysis through real time-PCR, were collected and analyzed by Reverse Transcriptase Loop-mediated Isothermal Amplification (RT-LAMP).
Results: From the 68 saliva samples, 45 (66.2%) were positive for ZIKV with an average time to positivity (Tp) of 13.5 min, and from the 63 urine samples, 25 (39.7%) were positive with the average Tp of 15.8 min. Saliva detected more samples (p = 0.0042) and had faster Tp (p = 0.0176) as compared with urine.
Conclusion: Saliva proved to be a feasible alternative to diagnose ZIKV infection during the acute phase by LAMP.</abstract><cop>United States</cop><pub>Taylor & Francis</pub><pmid>30202506</pmid><doi>10.1080/20002297.2018.1510712</doi><tpages>6</tpages><orcidid>https://orcid.org/0000-0001-5516-5177</orcidid><orcidid>https://orcid.org/0000-0003-4019-376X</orcidid><orcidid>https://orcid.org/0000-0002-1842-9521</orcidid><orcidid>https://orcid.org/0000-0002-2159-507X</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Blood Dengue Dentistry Flavivirus Guillain-Barre syndrome infection Infections LAMP Nucleic acids Original Polymerase chain reaction Ribonucleic acid RNA RNA viruses RNA-directed DNA polymerase Saliva Studies Thermal cycling Urine Vector-borne diseases virology Viruses Zika Zika virus |
title | Rapid diagnosis of Zika virus through saliva and urine by Loop-mediated isothermal amplification (LAMP) |
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