SPINT2 (HAI-2) missense variants identified in congenital sodium diarrhea/tufting enteropathy affect the ability of HAI-2 to inhibit prostasin but not matriptase

• Published in: Human molecular genetics 2019-03, Vol.28 (5), p.828-841
• Main Authors: Holt-Danborg, Lasse, Vodopiutz, Julia, Nonboe, Annika W, De Laffolie, Jan, Skovbjerg, Signe, Wolters, Victorien M, Müller, Thomas, Hetzer, Benjamin, Querfurt, Alexander, Zimmer, Klaus-Peter, Jensen, Jan K, Entenmann, Andreas, Heinz-Erian, Peter, Vogel, Lotte K, Janecke, Andreas R
• Format: Article
• Language: English
• Subjects: Abnormalities, Multiple - genetics; Abnormalities, Multiple - metabolism; Adolescent; Amino Acid Sequence; Child; Child, Preschool; Diarrhea - congenital; Diarrhea - genetics; Diarrhea - metabolism; Disease Susceptibility; Female; Gene Expression Regulation; Genetic Association Studies; Humans; Infant; Male; Membrane Glycoproteins - chemistry; Membrane Glycoproteins - genetics; Membrane Glycoproteins - metabolism; Metabolism, Inborn Errors - genetics; Metabolism, Inborn Errors - metabolism; Models, Biological; Models, Molecular; Mutation, Missense; Phenotype; Serine Endopeptidases - metabolism; Structure-Activity Relationship
• ISSN: 0964-6906; 1460-2083
• DOI: 10.1093/hmg/ddy394

Abstract The syndromic form of congenital sodium diarrhea (SCSD) is caused by bi-allelic mutations in SPINT2, which encodes a Kunitz-type serine protease inhibitor (HAI-2). We report three novel SCSD patients, two novel SPINT2 mutations and review published cases. The most common findings in SCSD patients were choanal atresia (20/34) and keratitis of infantile onset (26/34). Characteristic epithelial tufts on intestinal histology were reported in 13/34 patients. Of 13 different SPINT2 variants identified in SCSD, 4 are missense variants and localize to the second Kunitz domain (KD2) of HAI-2. HAI-2 has been implicated in the regulation of the activities of several serine proteases including prostasin and matriptase, which are both important for epithelial barrier formation. No patient with bi-allelic stop mutations was identified, suggesting that at least one SPINT2 allele encoding a protein with residual HAI-2 function is necessary for survival. We show that the SCSD-associated HAI-2 variants p.Phe161Val, p.Tyr163Cys and p.Gly168Ser all display decreased ability to inhibit prostasin-catalyzed cleavage. However, the SCSD-associated HAI-2 variants inhibited matriptase as efficiently as the wild-type HAI-2. Homology modeling indicated limited solvent exposure of the mutated amino acids, suggesting that they induce misfolding of KD2. This suggests that prostasin needs to engage with an exosite motif located on KD2 in addition to the binding loop (Cys47/Arg48) located on the first Kunitz domain in order to inhibit prostasin. In conclusion our data suggests that SCSD is caused by lack of inhibition of prostasin or a similar protease in the secretory pathway or on the plasma membrane.