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Comparative Nuclear Proteomics Analysis Provides Insight into the Mechanism of Signaling and Immune Response to Blast Disease Caused by Magnaporthe oryzae in Rice
Modulation of plant immune system by extrinsic/intrinsic factors and host‐specific determinants fine‐tunes cellular components involving multiple organelles, particularly nucleus to mount resistance against pathogen attack. Rice blast, caused by hemibiotrophic fungus Magnaporthe oryzae, is one of th...
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Published in: | Proteomics (Weinheim) 2019-02, Vol.19 (3), p.e1800188-n/a |
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description | Modulation of plant immune system by extrinsic/intrinsic factors and host‐specific determinants fine‐tunes cellular components involving multiple organelles, particularly nucleus to mount resistance against pathogen attack. Rice blast, caused by hemibiotrophic fungus Magnaporthe oryzae, is one of the most devastating diseases that adversely affect rice productivity. However, the role of nuclear proteins and their regulation in response to M. oryzae remains unknown. Here, the nucleus‐associated immune pathways in blast‐resistant rice genotype are elucidated. Temporal analysis of nuclear proteome is carried out using 2‐DE coupled MS/MS analysis. A total of 140 immune responsive proteins are identified associated with nuclear reorganization, cell division, energy production/deprivation, signaling, and gene regulation. The proteome data are interrogated using correlation network analysis that identified significant functional modules pointing toward immune‐related coinciding processes through a common mechanism of remodeling and homeostasis. Novel clues regarding blast resistance include nucleus‐associated redox homeostasis and glycolytic enzyme–mediated chromatin organization which manipulates cell division and immunity. Taken together, the study herein provides evidence that the coordination of nuclear function and reprogramming of host translational machinery regulate resistance mechanism against blast disease. |
doi_str_mv | 10.1002/pmic.201800188 |
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Rice blast, caused by hemibiotrophic fungus Magnaporthe oryzae, is one of the most devastating diseases that adversely affect rice productivity. However, the role of nuclear proteins and their regulation in response to M. oryzae remains unknown. Here, the nucleus‐associated immune pathways in blast‐resistant rice genotype are elucidated. Temporal analysis of nuclear proteome is carried out using 2‐DE coupled MS/MS analysis. A total of 140 immune responsive proteins are identified associated with nuclear reorganization, cell division, energy production/deprivation, signaling, and gene regulation. The proteome data are interrogated using correlation network analysis that identified significant functional modules pointing toward immune‐related coinciding processes through a common mechanism of remodeling and homeostasis. Novel clues regarding blast resistance include nucleus‐associated redox homeostasis and glycolytic enzyme–mediated chromatin organization which manipulates cell division and immunity. Taken together, the study herein provides evidence that the coordination of nuclear function and reprogramming of host translational machinery regulate resistance mechanism against blast disease.</description><identifier>ISSN: 1615-9853</identifier><identifier>EISSN: 1615-9861</identifier><identifier>DOI: 10.1002/pmic.201800188</identifier><identifier>PMID: 30468014</identifier><language>eng</language><publisher>Germany: Wiley Subscription Services, Inc</publisher><subject>2‐DE coupled mass spectrometry ; Cell division ; Chromatin ; comparative proteomics ; Correlation analysis ; Deprivation ; Disease Resistance ; Fungi ; Gene expression ; Gene regulation ; Genotypes ; Glycolysis ; Homeostasis ; Host-Pathogen Interactions ; Immune response ; Immune system ; Immunity ; Immunomodulation ; Magnaporthe - immunology ; Magnaporthe - physiology ; Magnaporthe oryzae ; Network analysis ; Nuclei (cytology) ; nucleus ; Organelles ; Oryza ; Oryza - immunology ; Oryza - microbiology ; Plant Diseases - immunology ; Plant Diseases - microbiology ; Plant Immunity ; Plant Proteins - immunology ; protein networks ; Proteins ; Proteomics ; Rice ; Rice blast ; Signal Transduction ; Signaling ; Tandem Mass Spectrometry</subject><ispartof>Proteomics (Weinheim), 2019-02, Vol.19 (3), p.e1800188-n/a</ispartof><rights>2018 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim</rights><rights>2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.</rights><rights>2019 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3692-e9e70700009ffb120f9366665c71a87dfde0747a392f40f39ad1363c293e635a3</citedby><cites>FETCH-LOGICAL-c3692-e9e70700009ffb120f9366665c71a87dfde0747a392f40f39ad1363c293e635a3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30468014$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Narula, Kanika</creatorcontrib><creatorcontrib>Choudhary, Pooja</creatorcontrib><creatorcontrib>Ghosh, Sudip</creatorcontrib><creatorcontrib>Elagamey, Eman</creatorcontrib><creatorcontrib>Chakraborty, Niranjan</creatorcontrib><creatorcontrib>Chakraborty, Subhra</creatorcontrib><title>Comparative Nuclear Proteomics Analysis Provides Insight into the Mechanism of Signaling and Immune Response to Blast Disease Caused by Magnaporthe oryzae in Rice</title><title>Proteomics (Weinheim)</title><addtitle>Proteomics</addtitle><description>Modulation of plant immune system by extrinsic/intrinsic factors and host‐specific determinants fine‐tunes cellular components involving multiple organelles, particularly nucleus to mount resistance against pathogen attack. Rice blast, caused by hemibiotrophic fungus Magnaporthe oryzae, is one of the most devastating diseases that adversely affect rice productivity. However, the role of nuclear proteins and their regulation in response to M. oryzae remains unknown. Here, the nucleus‐associated immune pathways in blast‐resistant rice genotype are elucidated. Temporal analysis of nuclear proteome is carried out using 2‐DE coupled MS/MS analysis. A total of 140 immune responsive proteins are identified associated with nuclear reorganization, cell division, energy production/deprivation, signaling, and gene regulation. The proteome data are interrogated using correlation network analysis that identified significant functional modules pointing toward immune‐related coinciding processes through a common mechanism of remodeling and homeostasis. Novel clues regarding blast resistance include nucleus‐associated redox homeostasis and glycolytic enzyme–mediated chromatin organization which manipulates cell division and immunity. Taken together, the study herein provides evidence that the coordination of nuclear function and reprogramming of host translational machinery regulate resistance mechanism against blast disease.</description><subject>2‐DE coupled mass spectrometry</subject><subject>Cell division</subject><subject>Chromatin</subject><subject>comparative proteomics</subject><subject>Correlation analysis</subject><subject>Deprivation</subject><subject>Disease Resistance</subject><subject>Fungi</subject><subject>Gene expression</subject><subject>Gene regulation</subject><subject>Genotypes</subject><subject>Glycolysis</subject><subject>Homeostasis</subject><subject>Host-Pathogen Interactions</subject><subject>Immune response</subject><subject>Immune system</subject><subject>Immunity</subject><subject>Immunomodulation</subject><subject>Magnaporthe - immunology</subject><subject>Magnaporthe - physiology</subject><subject>Magnaporthe oryzae</subject><subject>Network analysis</subject><subject>Nuclei (cytology)</subject><subject>nucleus</subject><subject>Organelles</subject><subject>Oryza</subject><subject>Oryza - immunology</subject><subject>Oryza - microbiology</subject><subject>Plant Diseases - immunology</subject><subject>Plant Diseases - microbiology</subject><subject>Plant Immunity</subject><subject>Plant Proteins - immunology</subject><subject>protein networks</subject><subject>Proteins</subject><subject>Proteomics</subject><subject>Rice</subject><subject>Rice blast</subject><subject>Signal Transduction</subject><subject>Signaling</subject><subject>Tandem Mass Spectrometry</subject><issn>1615-9853</issn><issn>1615-9861</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><recordid>eNqFkU9v1DAQxS0EoqVw5YgsceGyix0ncXws4d9KXagKnCOvM951ldipJykKH4dPiqMte-DCSJat0e89z-gR8pKzNWcsezv0zqwzxiuWTvWInPOSFytVlfzx6V2IM_IM8TYhslLyKTkTLC8rxvNz8rsO_aCjHt090C-T6UBHeh3DCCE5I730upvR4dK7dy0g3Xh0-8NInR8DHQ9At2AO2jvsabD0m9snhfN7qn1LN30_eaA3gEPwCDQp3nUaR_reIejUqPWE0NLdTLc6CYcQF8cQ518a0g_0xhl4Tp5Y3SG8eLgvyI-PH77Xn1dXXz9t6surlRGlylagQDLJUilrdzxjVokyVWEk15VsbQtM5lILldmcWaF0y0UpTKYElKLQ4oK8OfoOMdxNgGPTOzTQddpDmLDJuJB5KURRJfT1P-htmGJafKFkoUTOM5Go9ZEyMSBGsM0QXa_j3HDWLOk1S3rNKb0kePVgO-16aE_437gSUByBn66D-T92zfV2U3PB0ih_ANugpsk</recordid><startdate>201902</startdate><enddate>201902</enddate><creator>Narula, Kanika</creator><creator>Choudhary, Pooja</creator><creator>Ghosh, Sudip</creator><creator>Elagamey, Eman</creator><creator>Chakraborty, Niranjan</creator><creator>Chakraborty, Subhra</creator><general>Wiley Subscription Services, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7QP</scope><scope>7TK</scope><scope>7TM</scope><scope>8FD</scope><scope>FR3</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>201902</creationdate><title>Comparative Nuclear Proteomics Analysis Provides Insight into the Mechanism of Signaling and Immune Response to Blast Disease Caused by Magnaporthe oryzae in Rice</title><author>Narula, Kanika ; Choudhary, Pooja ; Ghosh, Sudip ; Elagamey, Eman ; Chakraborty, Niranjan ; Chakraborty, Subhra</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3692-e9e70700009ffb120f9366665c71a87dfde0747a392f40f39ad1363c293e635a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>2‐DE coupled mass spectrometry</topic><topic>Cell division</topic><topic>Chromatin</topic><topic>comparative proteomics</topic><topic>Correlation analysis</topic><topic>Deprivation</topic><topic>Disease Resistance</topic><topic>Fungi</topic><topic>Gene expression</topic><topic>Gene regulation</topic><topic>Genotypes</topic><topic>Glycolysis</topic><topic>Homeostasis</topic><topic>Host-Pathogen Interactions</topic><topic>Immune response</topic><topic>Immune system</topic><topic>Immunity</topic><topic>Immunomodulation</topic><topic>Magnaporthe - immunology</topic><topic>Magnaporthe - physiology</topic><topic>Magnaporthe oryzae</topic><topic>Network analysis</topic><topic>Nuclei (cytology)</topic><topic>nucleus</topic><topic>Organelles</topic><topic>Oryza</topic><topic>Oryza - immunology</topic><topic>Oryza - microbiology</topic><topic>Plant Diseases - immunology</topic><topic>Plant Diseases - microbiology</topic><topic>Plant Immunity</topic><topic>Plant Proteins - immunology</topic><topic>protein networks</topic><topic>Proteins</topic><topic>Proteomics</topic><topic>Rice</topic><topic>Rice blast</topic><topic>Signal Transduction</topic><topic>Signaling</topic><topic>Tandem Mass Spectrometry</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Narula, Kanika</creatorcontrib><creatorcontrib>Choudhary, Pooja</creatorcontrib><creatorcontrib>Ghosh, Sudip</creatorcontrib><creatorcontrib>Elagamey, Eman</creatorcontrib><creatorcontrib>Chakraborty, Niranjan</creatorcontrib><creatorcontrib>Chakraborty, Subhra</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Proteomics (Weinheim)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Narula, Kanika</au><au>Choudhary, Pooja</au><au>Ghosh, Sudip</au><au>Elagamey, Eman</au><au>Chakraborty, Niranjan</au><au>Chakraborty, Subhra</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Comparative Nuclear Proteomics Analysis Provides Insight into the Mechanism of Signaling and Immune Response to Blast Disease Caused by Magnaporthe oryzae in Rice</atitle><jtitle>Proteomics (Weinheim)</jtitle><addtitle>Proteomics</addtitle><date>2019-02</date><risdate>2019</risdate><volume>19</volume><issue>3</issue><spage>e1800188</spage><epage>n/a</epage><pages>e1800188-n/a</pages><issn>1615-9853</issn><eissn>1615-9861</eissn><abstract>Modulation of plant immune system by extrinsic/intrinsic factors and host‐specific determinants fine‐tunes cellular components involving multiple organelles, particularly nucleus to mount resistance against pathogen attack. Rice blast, caused by hemibiotrophic fungus Magnaporthe oryzae, is one of the most devastating diseases that adversely affect rice productivity. However, the role of nuclear proteins and their regulation in response to M. oryzae remains unknown. Here, the nucleus‐associated immune pathways in blast‐resistant rice genotype are elucidated. Temporal analysis of nuclear proteome is carried out using 2‐DE coupled MS/MS analysis. A total of 140 immune responsive proteins are identified associated with nuclear reorganization, cell division, energy production/deprivation, signaling, and gene regulation. The proteome data are interrogated using correlation network analysis that identified significant functional modules pointing toward immune‐related coinciding processes through a common mechanism of remodeling and homeostasis. Novel clues regarding blast resistance include nucleus‐associated redox homeostasis and glycolytic enzyme–mediated chromatin organization which manipulates cell division and immunity. Taken together, the study herein provides evidence that the coordination of nuclear function and reprogramming of host translational machinery regulate resistance mechanism against blast disease.</abstract><cop>Germany</cop><pub>Wiley Subscription Services, Inc</pub><pmid>30468014</pmid><doi>10.1002/pmic.201800188</doi><tpages>14</tpages></addata></record> |
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subjects | 2‐DE coupled mass spectrometry Cell division Chromatin comparative proteomics Correlation analysis Deprivation Disease Resistance Fungi Gene expression Gene regulation Genotypes Glycolysis Homeostasis Host-Pathogen Interactions Immune response Immune system Immunity Immunomodulation Magnaporthe - immunology Magnaporthe - physiology Magnaporthe oryzae Network analysis Nuclei (cytology) nucleus Organelles Oryza Oryza - immunology Oryza - microbiology Plant Diseases - immunology Plant Diseases - microbiology Plant Immunity Plant Proteins - immunology protein networks Proteins Proteomics Rice Rice blast Signal Transduction Signaling Tandem Mass Spectrometry |
title | Comparative Nuclear Proteomics Analysis Provides Insight into the Mechanism of Signaling and Immune Response to Blast Disease Caused by Magnaporthe oryzae in Rice |
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