Genome-Wide Gene Expression Patterns and Growth Requirements Suggest that Pelobacter carbinolicus Reduces Fe(III) Indirectly via Sulfide Production

• Published in: Applied and Environmental Microbiology 2008-07, Vol.74 (14), p.4277-4284
• Main Authors: Haveman, Shelley A, DiDonato, Raymond J. Jr, Villanueva, Laura, Shelobolina, Evgenya S, Postier, Bradley L, Xu, Bo, Liu, Anna, Lovley, Derek R
• Format: Article
• Language: English
• Subjects: Acetoin - metabolism; Bacteria; Biological and medical sciences; Cytochrome c Group - metabolism; Cytochromes; Deltaproteobacteria - genetics; Deltaproteobacteria - growth & development; Deltaproteobacteria - metabolism; Ethanol - metabolism; Fermentation; Ferric Compounds - metabolism; Fundamental and applied biological sciences. Psychology; Gene expression; Gene Expression Profiling; Genome, Bacterial; Genomics; Geobacter; Iron - metabolism; Microbiology; Nitrilotriacetic Acid - analogs & derivatives; Nitrilotriacetic Acid - metabolism; Oligonucleotide Array Sequence Analysis; Oxidation-Reduction; Physiology and Biotechnology; Proteins; Reverse Transcriptase Polymerase Chain Reaction; RNA, Bacterial - isolation & purification; Substrate Specificity; Sulfides - metabolism; Sulfur; Sulfur - metabolism; Sulfur-Reducing Bacteria - genetics; Sulfur-Reducing Bacteria - growth & development; Sulfur-Reducing Bacteria - metabolism; Thioredoxins - metabolism
• ISSN: 0099-2240; 1098-5336; 1098-6596
• DOI: 10.1128/AEM.02901-07

Although Pelobacter species are closely related to Geobacter species, recent studies suggested that Pelobacter carbinolicus may reduce Fe(III) via a different mechanism because it lacks the outer-surface c-type cytochromes that are required for Fe(III) reduction by Geobacter sulfurreducens. Investigation into the mechanisms for Fe(III) reduction demonstrated that P. carbinolicus had growth yields on both soluble and insoluble Fe(III) consistent with those of other Fe(III)-reducing bacteria. Comparison of whole-genome transcript levels during growth on Fe(III) versus fermentative growth demonstrated that the greatest apparent change in gene expression was an increase in transcript levels for four contiguous genes. These genes encode two putative periplasmic thioredoxins; a putative outer-membrane transport protein; and a putative NAD(FAD)-dependent dehydrogenase with homology to disulfide oxidoreductases in the N terminus, rhodanese (sulfurtransferase) in the center, and uncharacterized conserved proteins in the C terminus. Unlike G. sulfurreducens, transcript levels for cytochrome genes did not increase in P. carbinolicus during growth on Fe(III). P. carbinolicus could use sulfate as the sole source of sulfur during fermentative growth, but required elemental sulfur or sulfide for growth on Fe(III). The increased expression of genes potentially involved in sulfur reduction, coupled with the requirement for sulfur or sulfide during growth on Fe(III), suggests that P. carbinolicus reduces Fe(III) via an indirect mechanism in which (i) elemental sulfur is reduced to sulfide and (ii) the sulfide reduces Fe(III) with the regeneration of elemental sulfur. This contrasts with the direct reduction of Fe(III) that has been proposed for Geobacter species.