Introgression of the chromosomal region with the Pi-cd locus from Oryza meridionalis into O. sativa L. during rice domestication

Key message The genotype of the Pi - cd locus found in blast-resistant rice variety Kitakurin , which is a cultivated rice from Japan belonging to Oryza sativa japonica , is identical to that of its wild relative O. meridionalis. Crop domestication from wild relatives to cultivated species has encom...

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Published in:Theoretical and applied genetics 2019-07, Vol.132 (7), p.1981-1990
Main Authors: Fujino, Kenji, Hirayama, Yuji, Obara, Mari, Ikegaya, Tomohito
Format: Article
Language:English
Subjects:
Agriculture
Analysis
Biochemistry
Biomedical and Life Sciences
Biotechnology
Crops, Agricultural - genetics
Disease Resistance - genetics
DNA Transposable Elements
Domestication
Evolution, Molecular
Genes
Genetic aspects
Genome, Plant
Genomes
Genomics
Genotype
Genotype & phenotype
Genotypes
Life Sciences
Original Article
Oryza - classification
Oryza - genetics
Oryza meridionalis
Oryza sativa japonica
Plant Biochemistry
Plant Breeding/Biotechnology
Plant Diseases - genetics
Plant Diseases - microbiology
Plant Genetics and Genomics
Rice
Rice blast
Species
Transposons
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cited_by cdi_FETCH-LOGICAL-c476t-c146cb5a3caa10b92f9db10e4dc62f0a67d310973b296e0737a989b6c2acf2f83
cites cdi_FETCH-LOGICAL-c476t-c146cb5a3caa10b92f9db10e4dc62f0a67d310973b296e0737a989b6c2acf2f83
container_end_page 1990
container_issue 7
container_start_page 1981
container_title Theoretical and applied genetics
container_volume 132
creator Fujino, Kenji
Hirayama, Yuji
Obara, Mari
Ikegaya, Tomohito
description Key message The genotype of the Pi - cd locus found in blast-resistant rice variety Kitakurin , which is a cultivated rice from Japan belonging to Oryza sativa japonica , is identical to that of its wild relative O. meridionalis. Crop domestication from wild relatives to cultivated species has encompassed significant phenotypic changes. However, little is known about the genetic changes involved in domestication. Here, we surveyed the origin of the Pi - cd locus across Oryza species with AA genomes by comparison with the genome sequences of Hoshinoyume (HS), which does not carry the Pi - cd blast resistance gene, and Kitakurin (KK), which carries the Pi - cd blast resistance gene. We found that variety-specific transposons were enriched at the Pi - cd locus. The genotype of the Pi - cd locus characterized by transposons in HS and KK was specific to each Oryza species with the AA genome. The Kitaake (KT) genotype at the Pi - cd locus found in KK was identical only to that of O. meridionalis and distributed only in subgroups of japonica in the World Rice Collection and tropical japonica in the Japanese Rice Collection, whereas it was not present in O. rufipogon accessions. The distinct distributions of genotypes of the Pi - cd locus clearly demonstrated that the Pi - cd locus was introgressed from O. meridionalis into O. sativa , specific to tropical japonica .
doi_str_mv 10.1007/s00122-019-03332-1
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Crop domestication from wild relatives to cultivated species has encompassed significant phenotypic changes. However, little is known about the genetic changes involved in domestication. Here, we surveyed the origin of the Pi - cd locus across Oryza species with AA genomes by comparison with the genome sequences of Hoshinoyume (HS), which does not carry the Pi - cd blast resistance gene, and Kitakurin (KK), which carries the Pi - cd blast resistance gene. We found that variety-specific transposons were enriched at the Pi - cd locus. The genotype of the Pi - cd locus characterized by transposons in HS and KK was specific to each Oryza species with the AA genome. The Kitaake (KT) genotype at the Pi - cd locus found in KK was identical only to that of O. meridionalis and distributed only in subgroups of japonica in the World Rice Collection and tropical japonica in the Japanese Rice Collection, whereas it was not present in O. rufipogon accessions. The distinct distributions of genotypes of the Pi - cd locus clearly demonstrated that the Pi - cd locus was introgressed from O. meridionalis into O. sativa , specific to tropical japonica .</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>30911779</pmid><doi>10.1007/s00122-019-03332-1</doi><tpages>10</tpages></addata></record>
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source Springer Nature
subjects Agriculture
Analysis
Biochemistry
Biomedical and Life Sciences
Biotechnology
Crops, Agricultural - genetics
Disease Resistance - genetics
DNA Transposable Elements
Domestication
Evolution, Molecular
Genes
Genetic aspects
Genome, Plant
Genomes
Genomics
Genotype
Genotype & phenotype
Genotypes
Life Sciences
Original Article
Oryza - classification
Oryza - genetics
Oryza meridionalis
Oryza sativa japonica
Plant Biochemistry
Plant Breeding/Biotechnology
Plant Diseases - genetics
Plant Diseases - microbiology
Plant Genetics and Genomics
Rice
Rice blast
Species
Transposons
title Introgression of the chromosomal region with the Pi-cd locus from Oryza meridionalis into O. sativa L. during rice domestication
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