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Scoring Algorithms for a Computer-Based Cognitive Screening Tool: An Illustrative Example of Overfitting Machine Learning Approaches and the Impact on Estimates of Classification Accuracy
Computerized cognitive screening tools, such as the self-administered Computerized Assessment of Memory Cognitive Impairment (CAMCI), require little training and ensure standardized administration and could be an ideal test for primary care settings. We conducted a secondary analysis of a data set i...
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Published in: | Psychological assessment 2019-11, Vol.31 (11), p.1377-1382 |
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creator | Ursenbach, Jake O'Connell, Megan E. Neiser, Jennafer Tierney, Mary C. Morgan, Debra Kosteniuk, Julie Spiteri, Raymond J. |
description | Computerized cognitive screening tools, such as the self-administered Computerized Assessment of Memory Cognitive Impairment (CAMCI), require little training and ensure standardized administration and could be an ideal test for primary care settings. We conducted a secondary analysis of a data set including 887 older adults (M age = 72.7 years, SD = 7.1 years; 32.1% male; M years education = 13.4, SD = 2.7 years) with CAMCI scores and independent diagnoses of mild cognitive impairment (MCI). A study by the CAMCI developers used a portion of this data set with a machine learning decision tree model and suggested that the CAMCI had high classification accuracy for MCI (sensitivity = 0.86, specificity = 0.94). We found similar support for accuracy (sensitivity = 0.94, specificity = 0.94) by overfitting a decision tree model, but we found evidence of lower accuracy in a cross-validation sample (sensitivity = 0.62, specificity = 0.66). A logistic regression model, however, discriminated modestly in both training (sensitivity = 0.72, specificity = 0.80) and cross-validation data sets (sensitivity = 0.69, specificity = 0.74). Evidence for strong accuracy when overfitting a decision tree model and substantially reduced accuracy in cross-validation samples was replicated across 500 bootstrapped samples. In contrast, the evidence for accuracy of the logistic regression model was similar in the training and cross-validation samples. The logistic regression model produced accuracy estimates consistent with other published CAMCI studies, suggesting evidence for classification accuracy of the CAMCI for MCI is likely modest. This case study illustrates the general need for cross-validation and careful evaluation of the generalizability of machine learning models.
Public Significance Statement
Using an archival database, a decision tree machine learning method demonstrated overfitting and had substantially reduced evidence for classification accuracy measured in cross-validation, but the statistical method results in similar evidence of classification in training and cross-validation samples. The evidence for classification accuracy of the Computerized Assessment of Mild Cognitive Impairment for cognitive impairment is modest, and this has clinical implications. |
doi_str_mv | 10.1037/pas0000764 |
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Public Significance Statement
Using an archival database, a decision tree machine learning method demonstrated overfitting and had substantially reduced evidence for classification accuracy measured in cross-validation, but the statistical method results in similar evidence of classification in training and cross-validation samples. The evidence for classification accuracy of the Computerized Assessment of Mild Cognitive Impairment for cognitive impairment is modest, and this has clinical implications.</description><identifier>ISSN: 1040-3590</identifier><identifier>EISSN: 1939-134X</identifier><identifier>DOI: 10.1037/pas0000764</identifier><identifier>PMID: 31414853</identifier><language>eng</language><publisher>United States: American Psychological Association</publisher><subject>Aged ; Aged, 80 and over ; Algorithms ; Cognitive ability ; Cognitive Assessment ; Cognitive Dysfunction - diagnosis ; Cognitive Dysfunction - psychology ; Cognitive Impairment ; Computer Assisted Instruction ; Computers ; Diagnosis, Computer-Assisted - methods ; Female ; Human ; Humans ; Logistic Regression ; Machine Learning ; Male ; Medical screening ; Mental disorders ; Middle Aged ; Mild Cognitive Impairment ; Neuropsychological Tests - standards ; Reproducibility of Results ; Scoring (Testing) ; Screening Tests ; Sensitivity and Specificity</subject><ispartof>Psychological assessment, 2019-11, Vol.31 (11), p.1377-1382</ispartof><rights>2019 American Psychological Association</rights><rights>2019, American Psychological Association</rights><rights>Copyright American Psychological Association Nov 2019</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a381t-d9217f8c8f4d6079d6957b65a56be38da0a7d1bb4a6d9df837f3587327920be63</citedby><orcidid>0000-0001-6159-4322</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31414853$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Ben-Porath, Yossef S</contributor><creatorcontrib>Ursenbach, Jake</creatorcontrib><creatorcontrib>O'Connell, Megan E.</creatorcontrib><creatorcontrib>Neiser, Jennafer</creatorcontrib><creatorcontrib>Tierney, Mary C.</creatorcontrib><creatorcontrib>Morgan, Debra</creatorcontrib><creatorcontrib>Kosteniuk, Julie</creatorcontrib><creatorcontrib>Spiteri, Raymond J.</creatorcontrib><title>Scoring Algorithms for a Computer-Based Cognitive Screening Tool: An Illustrative Example of Overfitting Machine Learning Approaches and the Impact on Estimates of Classification Accuracy</title><title>Psychological assessment</title><addtitle>Psychol Assess</addtitle><description>Computerized cognitive screening tools, such as the self-administered Computerized Assessment of Memory Cognitive Impairment (CAMCI), require little training and ensure standardized administration and could be an ideal test for primary care settings. We conducted a secondary analysis of a data set including 887 older adults (M age = 72.7 years, SD = 7.1 years; 32.1% male; M years education = 13.4, SD = 2.7 years) with CAMCI scores and independent diagnoses of mild cognitive impairment (MCI). A study by the CAMCI developers used a portion of this data set with a machine learning decision tree model and suggested that the CAMCI had high classification accuracy for MCI (sensitivity = 0.86, specificity = 0.94). We found similar support for accuracy (sensitivity = 0.94, specificity = 0.94) by overfitting a decision tree model, but we found evidence of lower accuracy in a cross-validation sample (sensitivity = 0.62, specificity = 0.66). A logistic regression model, however, discriminated modestly in both training (sensitivity = 0.72, specificity = 0.80) and cross-validation data sets (sensitivity = 0.69, specificity = 0.74). Evidence for strong accuracy when overfitting a decision tree model and substantially reduced accuracy in cross-validation samples was replicated across 500 bootstrapped samples. In contrast, the evidence for accuracy of the logistic regression model was similar in the training and cross-validation samples. The logistic regression model produced accuracy estimates consistent with other published CAMCI studies, suggesting evidence for classification accuracy of the CAMCI for MCI is likely modest. This case study illustrates the general need for cross-validation and careful evaluation of the generalizability of machine learning models.
Public Significance Statement
Using an archival database, a decision tree machine learning method demonstrated overfitting and had substantially reduced evidence for classification accuracy measured in cross-validation, but the statistical method results in similar evidence of classification in training and cross-validation samples. The evidence for classification accuracy of the Computerized Assessment of Mild Cognitive Impairment for cognitive impairment is modest, and this has clinical implications.</description><subject>Aged</subject><subject>Aged, 80 and over</subject><subject>Algorithms</subject><subject>Cognitive ability</subject><subject>Cognitive Assessment</subject><subject>Cognitive Dysfunction - diagnosis</subject><subject>Cognitive Dysfunction - psychology</subject><subject>Cognitive Impairment</subject><subject>Computer Assisted Instruction</subject><subject>Computers</subject><subject>Diagnosis, Computer-Assisted - methods</subject><subject>Female</subject><subject>Human</subject><subject>Humans</subject><subject>Logistic Regression</subject><subject>Machine Learning</subject><subject>Male</subject><subject>Medical screening</subject><subject>Mental disorders</subject><subject>Middle Aged</subject><subject>Mild Cognitive Impairment</subject><subject>Neuropsychological Tests - standards</subject><subject>Reproducibility of Results</subject><subject>Scoring (Testing)</subject><subject>Screening Tests</subject><subject>Sensitivity and Specificity</subject><issn>1040-3590</issn><issn>1939-134X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><recordid>eNp9kVGL1DAQx4so3nn64geQgC8iVJMmbVLfesuqCyv3cCf4VqbpZDdH29QkPdzP5pcze3sq-GAIZJL5zT_D_LPsJaPvGOXy_QyBpiUr8Sg7ZzWvc8bFt8cppoLmvKzpWfYshFtKmeCqfJqdcSaYUCU_z35ea-fttCPNsEtB3I-BGOcJkJUb5yWizy8hYJ-uu8lGe4fkWnvE6Vhz49zwgTQT2QzDEqKH-_z6B4zzgMQZcnWH3tgYj_AX0Hs7Idki-PvqZp69S48YCEw9iXskm3EGHYmbyDpEO0JMuSSzGiAEa6xOH6Rco_XiQR-eZ08MDAFfPJwX2deP65vV53x79WmzarY5cMVi3tcFk0ZpZURfUVn3VV3KriqhrDrkqgcKsmddJ6Dq694oLg0vleSFrAvaYcUvsjcn3dTv9wVDbEcbNA4DTOiW0BaF5LKsCsUS-vof9NYtfkrdtQVnRVFUohL_pZIWl4pKmqi3J0p7F4JH084-zcQfWkbbo_HtX-MT_OpBculG7P-gv51OQH4CYIZ2DgcNPlo9YEiz9DjFo1iiW5Y2l5L_Al6mulI</recordid><startdate>20191101</startdate><enddate>20191101</enddate><creator>Ursenbach, Jake</creator><creator>O'Connell, Megan E.</creator><creator>Neiser, Jennafer</creator><creator>Tierney, Mary C.</creator><creator>Morgan, Debra</creator><creator>Kosteniuk, Julie</creator><creator>Spiteri, Raymond J.</creator><general>American Psychological Association</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7RZ</scope><scope>PSYQQ</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-6159-4322</orcidid></search><sort><creationdate>20191101</creationdate><title>Scoring Algorithms for a Computer-Based Cognitive Screening Tool: An Illustrative Example of Overfitting Machine Learning Approaches and the Impact on Estimates of Classification Accuracy</title><author>Ursenbach, Jake ; O'Connell, Megan E. ; Neiser, Jennafer ; Tierney, Mary C. ; Morgan, Debra ; Kosteniuk, Julie ; Spiteri, Raymond J.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a381t-d9217f8c8f4d6079d6957b65a56be38da0a7d1bb4a6d9df837f3587327920be63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Aged</topic><topic>Aged, 80 and over</topic><topic>Algorithms</topic><topic>Cognitive ability</topic><topic>Cognitive Assessment</topic><topic>Cognitive Dysfunction - diagnosis</topic><topic>Cognitive Dysfunction - psychology</topic><topic>Cognitive Impairment</topic><topic>Computer Assisted Instruction</topic><topic>Computers</topic><topic>Diagnosis, Computer-Assisted - methods</topic><topic>Female</topic><topic>Human</topic><topic>Humans</topic><topic>Logistic Regression</topic><topic>Machine Learning</topic><topic>Male</topic><topic>Medical screening</topic><topic>Mental disorders</topic><topic>Middle Aged</topic><topic>Mild Cognitive Impairment</topic><topic>Neuropsychological Tests - standards</topic><topic>Reproducibility of Results</topic><topic>Scoring (Testing)</topic><topic>Screening Tests</topic><topic>Sensitivity and Specificity</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ursenbach, Jake</creatorcontrib><creatorcontrib>O'Connell, Megan E.</creatorcontrib><creatorcontrib>Neiser, Jennafer</creatorcontrib><creatorcontrib>Tierney, Mary C.</creatorcontrib><creatorcontrib>Morgan, Debra</creatorcontrib><creatorcontrib>Kosteniuk, Julie</creatorcontrib><creatorcontrib>Spiteri, Raymond J.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>APA PsycArticles®</collection><collection>ProQuest One Psychology</collection><collection>MEDLINE - Academic</collection><jtitle>Psychological assessment</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ursenbach, Jake</au><au>O'Connell, Megan E.</au><au>Neiser, Jennafer</au><au>Tierney, Mary C.</au><au>Morgan, Debra</au><au>Kosteniuk, Julie</au><au>Spiteri, Raymond J.</au><au>Ben-Porath, Yossef S</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Scoring Algorithms for a Computer-Based Cognitive Screening Tool: An Illustrative Example of Overfitting Machine Learning Approaches and the Impact on Estimates of Classification Accuracy</atitle><jtitle>Psychological assessment</jtitle><addtitle>Psychol Assess</addtitle><date>2019-11-01</date><risdate>2019</risdate><volume>31</volume><issue>11</issue><spage>1377</spage><epage>1382</epage><pages>1377-1382</pages><issn>1040-3590</issn><eissn>1939-134X</eissn><abstract>Computerized cognitive screening tools, such as the self-administered Computerized Assessment of Memory Cognitive Impairment (CAMCI), require little training and ensure standardized administration and could be an ideal test for primary care settings. We conducted a secondary analysis of a data set including 887 older adults (M age = 72.7 years, SD = 7.1 years; 32.1% male; M years education = 13.4, SD = 2.7 years) with CAMCI scores and independent diagnoses of mild cognitive impairment (MCI). A study by the CAMCI developers used a portion of this data set with a machine learning decision tree model and suggested that the CAMCI had high classification accuracy for MCI (sensitivity = 0.86, specificity = 0.94). We found similar support for accuracy (sensitivity = 0.94, specificity = 0.94) by overfitting a decision tree model, but we found evidence of lower accuracy in a cross-validation sample (sensitivity = 0.62, specificity = 0.66). A logistic regression model, however, discriminated modestly in both training (sensitivity = 0.72, specificity = 0.80) and cross-validation data sets (sensitivity = 0.69, specificity = 0.74). Evidence for strong accuracy when overfitting a decision tree model and substantially reduced accuracy in cross-validation samples was replicated across 500 bootstrapped samples. In contrast, the evidence for accuracy of the logistic regression model was similar in the training and cross-validation samples. The logistic regression model produced accuracy estimates consistent with other published CAMCI studies, suggesting evidence for classification accuracy of the CAMCI for MCI is likely modest. This case study illustrates the general need for cross-validation and careful evaluation of the generalizability of machine learning models.
Public Significance Statement
Using an archival database, a decision tree machine learning method demonstrated overfitting and had substantially reduced evidence for classification accuracy measured in cross-validation, but the statistical method results in similar evidence of classification in training and cross-validation samples. The evidence for classification accuracy of the Computerized Assessment of Mild Cognitive Impairment for cognitive impairment is modest, and this has clinical implications.</abstract><cop>United States</cop><pub>American Psychological Association</pub><pmid>31414853</pmid><doi>10.1037/pas0000764</doi><tpages>6</tpages><orcidid>https://orcid.org/0000-0001-6159-4322</orcidid></addata></record> |
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subjects | Aged Aged, 80 and over Algorithms Cognitive ability Cognitive Assessment Cognitive Dysfunction - diagnosis Cognitive Dysfunction - psychology Cognitive Impairment Computer Assisted Instruction Computers Diagnosis, Computer-Assisted - methods Female Human Humans Logistic Regression Machine Learning Male Medical screening Mental disorders Middle Aged Mild Cognitive Impairment Neuropsychological Tests - standards Reproducibility of Results Scoring (Testing) Screening Tests Sensitivity and Specificity |
title | Scoring Algorithms for a Computer-Based Cognitive Screening Tool: An Illustrative Example of Overfitting Machine Learning Approaches and the Impact on Estimates of Classification Accuracy |
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