Alzheimer's disease risk SNPs show no strong effect on miRNA expression in human lymphoblastoid cell lines

The role of microRNAs (miRNAs) in the pathogenesis of Alzheimer's disease (AD) is currently extensively investigated. In this study, we assessed the potential impact of AD genetic risk variants on miRNA expression by performing large-scale bioinformatic data integration. Our analysis was based...

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Published in:Neurobiology of aging 2020-02, Vol.86, p.202.e1-202.e3
Main Authors: Wohlers, Inken, Schulz, Colin, Kilpert, Fabian, Bertram, Lars
Format: Article
Language:English
Subjects:
Alzheimer's disease
eQTLs
Gene expression
Genetic association
GWAS
miRNA
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description The role of microRNAs (miRNAs) in the pathogenesis of Alzheimer's disease (AD) is currently extensively investigated. In this study, we assessed the potential impact of AD genetic risk variants on miRNA expression by performing large-scale bioinformatic data integration. Our analysis was based on genetic variants from 3 AD genome-wide association studies (GWASs). Association with miRNA expression was tested by expression quantitative trait locus analysis using next-generation miRNA sequencing data generated in lymphoblastoid cell lines. Although, overall, we did not identify a strong effect of AD GWAS variants on miRNA expression in this cell type, we highlight 2 notable outliers, that is, miR-29c-5p and miR-6840-5p. MiR-29c-5p was recently reported to be involved in the regulation of BACE1 and SORL1 expression. In conclusion, despite 2 exceptions, our large-scale assessment provides only limited support for the hypothesis that AD GWAS variants act as miRNA expression quantitative trait loci.
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subjects Alzheimer's disease
eQTLs
Gene expression
Genetic association
GWAS
miRNA
title Alzheimer's disease risk SNPs show no strong effect on miRNA expression in human lymphoblastoid cell lines
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