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Diversity and Distribution of Methanogenic Community Between Two Typical Alpine Ecosystems on the Qinghai–Tibetan Plateau
Alpine permafrost regions are important sources of biogenic CH 4 and methanogens play an important role in the methane-producing process. The alpine permafrost on the Qinghai–Tibetan plateau comprises about one-sixth of China’s land area, and there are various types of alpine ecosystems. However, th...
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Published in: | Current microbiology 2020-06, Vol.77 (6), p.1061-1069 |
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description | Alpine permafrost regions are important sources of biogenic CH
4
and methanogens play an important role in the methane-producing process. The alpine permafrost on the Qinghai–Tibetan plateau comprises about one-sixth of China’s land area, and there are various types of alpine ecosystems. However, the methanogenic communities in the typical alpine ecosystems are poorly understood. In this study, the active layers and permafrost layers of the natural ecosystem of alpine grassland (DZ2-1) and alpine swamp meadow (DZ2-5) were selected to investigate the diversity and abundance of methanogenic communities.
Methanobacterium
(63.65%) are overwhelmingly dominant in the active layer of the alpine grassland (DZ2-1A). ZC-I cluster (26.13%), RC-I cluster (19.56%), and
Methanobacterium
(15.02%) are the dominant groups in the permafrost layer of the alpine grassland (DZ2-1P).
Methanosaeta
(32.92%), Fen cluster (29.59%),
Methanosarcina
(16.33%), and
Methanobacterium
(13.95%) are the dominant groups in the active layer of the alpine swamp meadow (DZ2-5A), whereas the Fen cluster (50.85%), ZC-I cluster (27.63%), and RC-I cluster (14.15%) are relatively abundant in the permafrost layer of the alpine swamp meadow (DZ2-5P). qPCR data showed that the abundance of methanogens was higher in the natural ecosystem of alpine swamp meadow than in alpine grassland. We found that the community characteristics of methanogens were related to environmental factors. Pearson correlation analyses indicated that the relative abundance of
Methanobacterium
had a significantly positive correlation with hydrogen concentration (
P
|
doi_str_mv | 10.1007/s00284-020-01891-x |
format | article |
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4
and methanogens play an important role in the methane-producing process. The alpine permafrost on the Qinghai–Tibetan plateau comprises about one-sixth of China’s land area, and there are various types of alpine ecosystems. However, the methanogenic communities in the typical alpine ecosystems are poorly understood. In this study, the active layers and permafrost layers of the natural ecosystem of alpine grassland (DZ2-1) and alpine swamp meadow (DZ2-5) were selected to investigate the diversity and abundance of methanogenic communities.
Methanobacterium
(63.65%) are overwhelmingly dominant in the active layer of the alpine grassland (DZ2-1A). ZC-I cluster (26.13%), RC-I cluster (19.56%), and
Methanobacterium
(15.02%) are the dominant groups in the permafrost layer of the alpine grassland (DZ2-1P).
Methanosaeta
(32.92%), Fen cluster (29.59%),
Methanosarcina
(16.33%), and
Methanobacterium
(13.95%) are the dominant groups in the active layer of the alpine swamp meadow (DZ2-5A), whereas the Fen cluster (50.85%), ZC-I cluster (27.63%), and RC-I cluster (14.15%) are relatively abundant in the permafrost layer of the alpine swamp meadow (DZ2-5P). qPCR data showed that the abundance of methanogens was higher in the natural ecosystem of alpine swamp meadow than in alpine grassland. We found that the community characteristics of methanogens were related to environmental factors. Pearson correlation analyses indicated that the relative abundance of
Methanobacterium
had a significantly positive correlation with hydrogen concentration (
P
< 0.01), while the relative abundances of
Methanosaeta
and
Methanosarcina
were positively correlated with acetate concentration (
P
< 0.05). This study will help us to understand the methanogenic communities and their surrounding environments in alpine ecosystems.</description><identifier>ISSN: 0343-8651</identifier><identifier>EISSN: 1432-0991</identifier><identifier>DOI: 10.1007/s00284-020-01891-x</identifier><identifier>PMID: 32036395</identifier><language>eng</language><publisher>New York: Springer US</publisher><subject>Abundance ; Acetates - analysis ; Acetic acid ; Alpine environments ; Bacterial Proteins - genetics ; Biodiversity ; Biomedical and Life Sciences ; Biotechnology ; Clusters ; Correlation analysis ; Ecosystem ; Ecosystems ; Environmental factors ; Euryarchaeota - classification ; Euryarchaeota - genetics ; Euryarchaeota - isolation & purification ; Grassland ; Grasslands ; Hydrogen - analysis ; Life Sciences ; Meadows ; Methane ; Methanobacteria ; Methanogenic bacteria ; Methanosaeta ; Methanosarcina ; Microbiology ; Microbiota - genetics ; Permafrost ; Permafrost - chemistry ; Permafrost - microbiology ; Phylogeny ; Relative abundance ; Tibet ; Wetlands</subject><ispartof>Current microbiology, 2020-06, Vol.77 (6), p.1061-1069</ispartof><rights>Springer Science+Business Media, LLC, part of Springer Nature 2020</rights><rights>Springer Science+Business Media, LLC, part of Springer Nature 2020.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-2d7b05a3c9904b735c5de100c18ee3ce456cbc582c682d3593db78d7e44d9d8e3</citedby><cites>FETCH-LOGICAL-c375t-2d7b05a3c9904b735c5de100c18ee3ce456cbc582c682d3593db78d7e44d9d8e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32036395$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wang, Yanfa</creatorcontrib><creatorcontrib>Cui, Hongpeng</creatorcontrib><creatorcontrib>Su, Xin</creatorcontrib><creatorcontrib>Wei, Shiping</creatorcontrib><creatorcontrib>Zhu, Youhai</creatorcontrib><creatorcontrib>Lu, Zhenquan</creatorcontrib><creatorcontrib>Pang, Shouji</creatorcontrib><creatorcontrib>Liu, Hui</creatorcontrib><creatorcontrib>Zhang, Shuai</creatorcontrib><creatorcontrib>Hou, Weiguo</creatorcontrib><title>Diversity and Distribution of Methanogenic Community Between Two Typical Alpine Ecosystems on the Qinghai–Tibetan Plateau</title><title>Current microbiology</title><addtitle>Curr Microbiol</addtitle><addtitle>Curr Microbiol</addtitle><description>Alpine permafrost regions are important sources of biogenic CH
4
and methanogens play an important role in the methane-producing process. The alpine permafrost on the Qinghai–Tibetan plateau comprises about one-sixth of China’s land area, and there are various types of alpine ecosystems. However, the methanogenic communities in the typical alpine ecosystems are poorly understood. In this study, the active layers and permafrost layers of the natural ecosystem of alpine grassland (DZ2-1) and alpine swamp meadow (DZ2-5) were selected to investigate the diversity and abundance of methanogenic communities.
Methanobacterium
(63.65%) are overwhelmingly dominant in the active layer of the alpine grassland (DZ2-1A). ZC-I cluster (26.13%), RC-I cluster (19.56%), and
Methanobacterium
(15.02%) are the dominant groups in the permafrost layer of the alpine grassland (DZ2-1P).
Methanosaeta
(32.92%), Fen cluster (29.59%),
Methanosarcina
(16.33%), and
Methanobacterium
(13.95%) are the dominant groups in the active layer of the alpine swamp meadow (DZ2-5A), whereas the Fen cluster (50.85%), ZC-I cluster (27.63%), and RC-I cluster (14.15%) are relatively abundant in the permafrost layer of the alpine swamp meadow (DZ2-5P). qPCR data showed that the abundance of methanogens was higher in the natural ecosystem of alpine swamp meadow than in alpine grassland. We found that the community characteristics of methanogens were related to environmental factors. Pearson correlation analyses indicated that the relative abundance of
Methanobacterium
had a significantly positive correlation with hydrogen concentration (
P
< 0.01), while the relative abundances of
Methanosaeta
and
Methanosarcina
were positively correlated with acetate concentration (
P
< 0.05). This study will help us to understand the methanogenic communities and their surrounding environments in alpine ecosystems.</description><subject>Abundance</subject><subject>Acetates - analysis</subject><subject>Acetic acid</subject><subject>Alpine environments</subject><subject>Bacterial Proteins - genetics</subject><subject>Biodiversity</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Clusters</subject><subject>Correlation analysis</subject><subject>Ecosystem</subject><subject>Ecosystems</subject><subject>Environmental factors</subject><subject>Euryarchaeota - classification</subject><subject>Euryarchaeota - genetics</subject><subject>Euryarchaeota - isolation & purification</subject><subject>Grassland</subject><subject>Grasslands</subject><subject>Hydrogen - analysis</subject><subject>Life Sciences</subject><subject>Meadows</subject><subject>Methane</subject><subject>Methanobacteria</subject><subject>Methanogenic bacteria</subject><subject>Methanosaeta</subject><subject>Methanosarcina</subject><subject>Microbiology</subject><subject>Microbiota - genetics</subject><subject>Permafrost</subject><subject>Permafrost - chemistry</subject><subject>Permafrost - microbiology</subject><subject>Phylogeny</subject><subject>Relative abundance</subject><subject>Tibet</subject><subject>Wetlands</subject><issn>0343-8651</issn><issn>1432-0991</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNp9kc1uEzEQxy0EomnhBTggS1y4LPXHOmsfS1o-pFaAFM6W154krnbtYHtpIy59B96QJ8FtCpU4cJrD_OY_o_kh9IKSN5SQ7jgTwmTbEEYaQqWizfUjNKMtZw1Rij5GM8Jb3si5oAfoMOdLQihThD5FB5wRPudKzNCPU_8dUvZlh01w-NTnknw_FR8Djit8AWVjQlxD8BYv4jhO4RZ9C-UKIODlVcTL3dZbM-CTYesD4DMb8y4XGDOuEWUD-IsP643xv25-Ln0PxQT8eTAFzPQMPVmZIcPz-3qEvr47Wy4-NOef3n9cnJw3lneiNMx1PRGGW6VI23dcWOGgPsBSCcAttGJueysks3PJHBeKu76TroO2dcpJ4Efo9T53m-K3CXLRo88WhsEEiFPWjAtOaCuZrOirf9DLOKVQr6tU3S8E61Sl2J6yKeacYKW3yY8m7TQl-laN3qvRVY2-U6Ov69DL--ipH8H9HfnjogJ8D-TaCmtID7v_E_sbV-qcMQ</recordid><startdate>20200601</startdate><enddate>20200601</enddate><creator>Wang, Yanfa</creator><creator>Cui, Hongpeng</creator><creator>Su, Xin</creator><creator>Wei, Shiping</creator><creator>Zhu, Youhai</creator><creator>Lu, Zhenquan</creator><creator>Pang, Shouji</creator><creator>Liu, Hui</creator><creator>Zhang, Shuai</creator><creator>Hou, Weiguo</creator><general>Springer US</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M7N</scope><scope>M7P</scope><scope>MBDVC</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20200601</creationdate><title>Diversity and Distribution of Methanogenic Community Between Two Typical Alpine Ecosystems on the Qinghai–Tibetan Plateau</title><author>Wang, Yanfa ; Cui, Hongpeng ; Su, Xin ; Wei, Shiping ; Zhu, Youhai ; Lu, Zhenquan ; Pang, Shouji ; Liu, Hui ; Zhang, Shuai ; Hou, Weiguo</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-2d7b05a3c9904b735c5de100c18ee3ce456cbc582c682d3593db78d7e44d9d8e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Abundance</topic><topic>Acetates - analysis</topic><topic>Acetic acid</topic><topic>Alpine environments</topic><topic>Bacterial Proteins - genetics</topic><topic>Biodiversity</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Clusters</topic><topic>Correlation analysis</topic><topic>Ecosystem</topic><topic>Ecosystems</topic><topic>Environmental factors</topic><topic>Euryarchaeota - classification</topic><topic>Euryarchaeota - genetics</topic><topic>Euryarchaeota - isolation & purification</topic><topic>Grassland</topic><topic>Grasslands</topic><topic>Hydrogen - analysis</topic><topic>Life Sciences</topic><topic>Meadows</topic><topic>Methane</topic><topic>Methanobacteria</topic><topic>Methanogenic bacteria</topic><topic>Methanosaeta</topic><topic>Methanosarcina</topic><topic>Microbiology</topic><topic>Microbiota - genetics</topic><topic>Permafrost</topic><topic>Permafrost - chemistry</topic><topic>Permafrost - microbiology</topic><topic>Phylogeny</topic><topic>Relative abundance</topic><topic>Tibet</topic><topic>Wetlands</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wang, Yanfa</creatorcontrib><creatorcontrib>Cui, Hongpeng</creatorcontrib><creatorcontrib>Su, Xin</creatorcontrib><creatorcontrib>Wei, Shiping</creatorcontrib><creatorcontrib>Zhu, Youhai</creatorcontrib><creatorcontrib>Lu, Zhenquan</creatorcontrib><creatorcontrib>Pang, Shouji</creatorcontrib><creatorcontrib>Liu, Hui</creatorcontrib><creatorcontrib>Zhang, Shuai</creatorcontrib><creatorcontrib>Hou, Weiguo</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>ProQuest research library</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>ProQuest Biological Science Journals</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Current microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wang, Yanfa</au><au>Cui, Hongpeng</au><au>Su, Xin</au><au>Wei, Shiping</au><au>Zhu, Youhai</au><au>Lu, Zhenquan</au><au>Pang, Shouji</au><au>Liu, Hui</au><au>Zhang, Shuai</au><au>Hou, Weiguo</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Diversity and Distribution of Methanogenic Community Between Two Typical Alpine Ecosystems on the Qinghai–Tibetan Plateau</atitle><jtitle>Current microbiology</jtitle><stitle>Curr Microbiol</stitle><addtitle>Curr Microbiol</addtitle><date>2020-06-01</date><risdate>2020</risdate><volume>77</volume><issue>6</issue><spage>1061</spage><epage>1069</epage><pages>1061-1069</pages><issn>0343-8651</issn><eissn>1432-0991</eissn><abstract>Alpine permafrost regions are important sources of biogenic CH
4
and methanogens play an important role in the methane-producing process. The alpine permafrost on the Qinghai–Tibetan plateau comprises about one-sixth of China’s land area, and there are various types of alpine ecosystems. However, the methanogenic communities in the typical alpine ecosystems are poorly understood. In this study, the active layers and permafrost layers of the natural ecosystem of alpine grassland (DZ2-1) and alpine swamp meadow (DZ2-5) were selected to investigate the diversity and abundance of methanogenic communities.
Methanobacterium
(63.65%) are overwhelmingly dominant in the active layer of the alpine grassland (DZ2-1A). ZC-I cluster (26.13%), RC-I cluster (19.56%), and
Methanobacterium
(15.02%) are the dominant groups in the permafrost layer of the alpine grassland (DZ2-1P).
Methanosaeta
(32.92%), Fen cluster (29.59%),
Methanosarcina
(16.33%), and
Methanobacterium
(13.95%) are the dominant groups in the active layer of the alpine swamp meadow (DZ2-5A), whereas the Fen cluster (50.85%), ZC-I cluster (27.63%), and RC-I cluster (14.15%) are relatively abundant in the permafrost layer of the alpine swamp meadow (DZ2-5P). qPCR data showed that the abundance of methanogens was higher in the natural ecosystem of alpine swamp meadow than in alpine grassland. We found that the community characteristics of methanogens were related to environmental factors. Pearson correlation analyses indicated that the relative abundance of
Methanobacterium
had a significantly positive correlation with hydrogen concentration (
P
< 0.01), while the relative abundances of
Methanosaeta
and
Methanosarcina
were positively correlated with acetate concentration (
P
< 0.05). This study will help us to understand the methanogenic communities and their surrounding environments in alpine ecosystems.</abstract><cop>New York</cop><pub>Springer US</pub><pmid>32036395</pmid><doi>10.1007/s00284-020-01891-x</doi><tpages>9</tpages></addata></record> |
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subjects | Abundance Acetates - analysis Acetic acid Alpine environments Bacterial Proteins - genetics Biodiversity Biomedical and Life Sciences Biotechnology Clusters Correlation analysis Ecosystem Ecosystems Environmental factors Euryarchaeota - classification Euryarchaeota - genetics Euryarchaeota - isolation & purification Grassland Grasslands Hydrogen - analysis Life Sciences Meadows Methane Methanobacteria Methanogenic bacteria Methanosaeta Methanosarcina Microbiology Microbiota - genetics Permafrost Permafrost - chemistry Permafrost - microbiology Phylogeny Relative abundance Tibet Wetlands |
title | Diversity and Distribution of Methanogenic Community Between Two Typical Alpine Ecosystems on the Qinghai–Tibetan Plateau |
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