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Phylogeny and classification of the tribe Lepisoreae (Polypodiaceae; pteridophyta) with the description of a new genus, Ellipinema gen. nov., segregated from Lepisorus
[Display omitted] •Complete or nearly complete sampling of non-Lepisorus genera is achieved.•All seven genera except Lepisorus in Lepisoreae are confirmed to be monophyletic.•Ellipinema is described as new to maintain the monophyly of Lepisorus.•Relationships of major clades are well resolved and st...
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Published in: | Molecular phylogenetics and evolution 2020-07, Vol.148, p.106803-106803, Article 106803 |
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creator | Zhang, Liang Zhou, Xin-Mao Liang, Zhen-Long Fan, Xue-Ping Thi Lu, Ngan Song, Min-Shu Knapp, Ralf Gao, Xin-Fen Sun, Hang Zhang, Li-Bing |
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•Complete or nearly complete sampling of non-Lepisorus genera is achieved.•All seven genera except Lepisorus in Lepisoreae are confirmed to be monophyletic.•Ellipinema is described as new to maintain the monophyly of Lepisorus.•Relationships of major clades are well resolved and strongly supported.•We propose an eight-genus classification based on the phylogeny, morphology, distribution.
Lepisoroid ferns (tribe Lepisoreae, Polypodiaceae) are arguably one of the most confusing fern groups in Polypodiaceae in terms of delimitation of genera largely because of their simple morphology. Previous molecular studies either had very small taxon sampling of the non-Lepisorus genera and did not well resolve the relationships among these genera, or had a relatively large sampling at species level but the critical species were missing or their relationships were not well resolved. A recent study resolved the newly sampled Lepisorus jakonensis as sister to the remaining genera in Lepisoreae excluding Paragramma, and the authors lumped all the six well recognized genera into Lepisorus. In the present study, to infer a phylogeny we used DNA sequences of five plastid markers (matK, rbcL, rbcL-atpB, rps4 &rps4-trnS, trnL &trnL-F) of 172 accessions representing ca. 44 species of non-Lepisorus genera and 54 accessions representing ca. 50 species of Lepisorus as ingroup, and 10 non-Lepisoreae accessions from the most closely related four genera (Leptochilus, Microsorum, Phymatosorus, and Goniophlebium) in Microsoroideae and one genus (Pyrrosia) in Platycerioideae. Our major results include: (1) All seven currently defined genera except Lepisorus in Lepisoreae are confirmed to be monophyletic; (2) The Lepisorus jakonensis clade is confirmed to be the second earliest diverged lineage in Lepisoreae; (3) Neolepisorus is resolved as sister to the rest in a clade containing all non-Lepisorus genera except Paragramma; (4) Lemmaphyllum is sister to a clade containing Lepidomicrosorium, Neocheiropteris, and Tricholepidium; and (5) Ellipinema gen. nov. is segregated from Lepisorus based on the phylogeny and morphology in order to stabilize the current usage of the existing six non-Lepisorus genera and species names in these genera. A key to all eight genera of Lepisoreae is provided. |
doi_str_mv | 10.1016/j.ympev.2020.106803 |
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•Complete or nearly complete sampling of non-Lepisorus genera is achieved.•All seven genera except Lepisorus in Lepisoreae are confirmed to be monophyletic.•Ellipinema is described as new to maintain the monophyly of Lepisorus.•Relationships of major clades are well resolved and strongly supported.•We propose an eight-genus classification based on the phylogeny, morphology, distribution.
Lepisoroid ferns (tribe Lepisoreae, Polypodiaceae) are arguably one of the most confusing fern groups in Polypodiaceae in terms of delimitation of genera largely because of their simple morphology. Previous molecular studies either had very small taxon sampling of the non-Lepisorus genera and did not well resolve the relationships among these genera, or had a relatively large sampling at species level but the critical species were missing or their relationships were not well resolved. A recent study resolved the newly sampled Lepisorus jakonensis as sister to the remaining genera in Lepisoreae excluding Paragramma, and the authors lumped all the six well recognized genera into Lepisorus. In the present study, to infer a phylogeny we used DNA sequences of five plastid markers (matK, rbcL, rbcL-atpB, rps4 &rps4-trnS, trnL &trnL-F) of 172 accessions representing ca. 44 species of non-Lepisorus genera and 54 accessions representing ca. 50 species of Lepisorus as ingroup, and 10 non-Lepisoreae accessions from the most closely related four genera (Leptochilus, Microsorum, Phymatosorus, and Goniophlebium) in Microsoroideae and one genus (Pyrrosia) in Platycerioideae. Our major results include: (1) All seven currently defined genera except Lepisorus in Lepisoreae are confirmed to be monophyletic; (2) The Lepisorus jakonensis clade is confirmed to be the second earliest diverged lineage in Lepisoreae; (3) Neolepisorus is resolved as sister to the rest in a clade containing all non-Lepisorus genera except Paragramma; (4) Lemmaphyllum is sister to a clade containing Lepidomicrosorium, Neocheiropteris, and Tricholepidium; and (5) Ellipinema gen. nov. is segregated from Lepisorus based on the phylogeny and morphology in order to stabilize the current usage of the existing six non-Lepisorus genera and species names in these genera. A key to all eight genera of Lepisoreae is provided.</description><identifier>ISSN: 1055-7903</identifier><identifier>EISSN: 1095-9513</identifier><identifier>DOI: 10.1016/j.ympev.2020.106803</identifier><identifier>PMID: 32217168</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Fern phylogeny ; Lemmaphyllum ; Lepidomicrosorium ; Lepisorus ; Neocheiropteris ; Neolepisorus ; Paragramma ; Paraphyses ; Tricholepidium</subject><ispartof>Molecular phylogenetics and evolution, 2020-07, Vol.148, p.106803-106803, Article 106803</ispartof><rights>2020 Elsevier Inc.</rights><rights>Copyright © 2020 Elsevier Inc. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c359t-35b31b768707b290d240da47e91f32f445abbf5aea0f12feca2bf8d2bbef711d3</citedby><cites>FETCH-LOGICAL-c359t-35b31b768707b290d240da47e91f32f445abbf5aea0f12feca2bf8d2bbef711d3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32217168$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Liang</creatorcontrib><creatorcontrib>Zhou, Xin-Mao</creatorcontrib><creatorcontrib>Liang, Zhen-Long</creatorcontrib><creatorcontrib>Fan, Xue-Ping</creatorcontrib><creatorcontrib>Thi Lu, Ngan</creatorcontrib><creatorcontrib>Song, Min-Shu</creatorcontrib><creatorcontrib>Knapp, Ralf</creatorcontrib><creatorcontrib>Gao, Xin-Fen</creatorcontrib><creatorcontrib>Sun, Hang</creatorcontrib><creatorcontrib>Zhang, Li-Bing</creatorcontrib><title>Phylogeny and classification of the tribe Lepisoreae (Polypodiaceae; pteridophyta) with the description of a new genus, Ellipinema gen. nov., segregated from Lepisorus</title><title>Molecular phylogenetics and evolution</title><addtitle>Mol Phylogenet Evol</addtitle><description>[Display omitted]
•Complete or nearly complete sampling of non-Lepisorus genera is achieved.•All seven genera except Lepisorus in Lepisoreae are confirmed to be monophyletic.•Ellipinema is described as new to maintain the monophyly of Lepisorus.•Relationships of major clades are well resolved and strongly supported.•We propose an eight-genus classification based on the phylogeny, morphology, distribution.
Lepisoroid ferns (tribe Lepisoreae, Polypodiaceae) are arguably one of the most confusing fern groups in Polypodiaceae in terms of delimitation of genera largely because of their simple morphology. Previous molecular studies either had very small taxon sampling of the non-Lepisorus genera and did not well resolve the relationships among these genera, or had a relatively large sampling at species level but the critical species were missing or their relationships were not well resolved. A recent study resolved the newly sampled Lepisorus jakonensis as sister to the remaining genera in Lepisoreae excluding Paragramma, and the authors lumped all the six well recognized genera into Lepisorus. In the present study, to infer a phylogeny we used DNA sequences of five plastid markers (matK, rbcL, rbcL-atpB, rps4 &rps4-trnS, trnL &trnL-F) of 172 accessions representing ca. 44 species of non-Lepisorus genera and 54 accessions representing ca. 50 species of Lepisorus as ingroup, and 10 non-Lepisoreae accessions from the most closely related four genera (Leptochilus, Microsorum, Phymatosorus, and Goniophlebium) in Microsoroideae and one genus (Pyrrosia) in Platycerioideae. Our major results include: (1) All seven currently defined genera except Lepisorus in Lepisoreae are confirmed to be monophyletic; (2) The Lepisorus jakonensis clade is confirmed to be the second earliest diverged lineage in Lepisoreae; (3) Neolepisorus is resolved as sister to the rest in a clade containing all non-Lepisorus genera except Paragramma; (4) Lemmaphyllum is sister to a clade containing Lepidomicrosorium, Neocheiropteris, and Tricholepidium; and (5) Ellipinema gen. nov. is segregated from Lepisorus based on the phylogeny and morphology in order to stabilize the current usage of the existing six non-Lepisorus genera and species names in these genera. A key to all eight genera of Lepisoreae is provided.</description><subject>Fern phylogeny</subject><subject>Lemmaphyllum</subject><subject>Lepidomicrosorium</subject><subject>Lepisorus</subject><subject>Neocheiropteris</subject><subject>Neolepisorus</subject><subject>Paragramma</subject><subject>Paraphyses</subject><subject>Tricholepidium</subject><issn>1055-7903</issn><issn>1095-9513</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNp9kctu1DAUhiMEoqXwBEjIyyI1wZd4kgixQFW5SCPRBawtX45nPEpiYztT5Yl4TZJOhyWrc9H_n19HX1G8JbgimGw-HKp5CHCsKKbrZtNi9qy4JLjjZccJe772nJdNh9lF8SqlA8aE8I6_LC4YpaQhm_ay-HO_n3u_g3FGcjRI9zIlZ52W2fkReYvyHlCOTgHaQnDJR5CAru99PwdvnNTL-BGFDNEZH_Zzlu_Rg8v7R5-BpKML51MSjfCAlqwp3aC7vnfBjTDIdVOh0R-rG5RgF2EnMxhkox_OmVN6Xbywsk_w5qleFb--3P28_VZuf3z9fvt5W2rGu1wyrhhRzaZtcKNohw2tsZF1Ax2xjNq65lIpyyVIbAm1oCVVtjVUKbANIYZdFdenuyH63xOkLAaXNPS9HMFPSVDW1pRgSutFyk5SHX1KEawI0Q0yzoJgsRISB_FISKyExInQ4nr3FDCpAcw_zxnJIvh0EsDy5tFBFEk7GDUYF0FnYbz7b8BfXI2mqA</recordid><startdate>20200701</startdate><enddate>20200701</enddate><creator>Zhang, Liang</creator><creator>Zhou, Xin-Mao</creator><creator>Liang, Zhen-Long</creator><creator>Fan, Xue-Ping</creator><creator>Thi Lu, Ngan</creator><creator>Song, Min-Shu</creator><creator>Knapp, Ralf</creator><creator>Gao, Xin-Fen</creator><creator>Sun, Hang</creator><creator>Zhang, Li-Bing</creator><general>Elsevier Inc</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20200701</creationdate><title>Phylogeny and classification of the tribe Lepisoreae (Polypodiaceae; pteridophyta) with the description of a new genus, Ellipinema gen. nov., segregated from Lepisorus</title><author>Zhang, Liang ; Zhou, Xin-Mao ; Liang, Zhen-Long ; Fan, Xue-Ping ; Thi Lu, Ngan ; Song, Min-Shu ; Knapp, Ralf ; Gao, Xin-Fen ; Sun, Hang ; Zhang, Li-Bing</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c359t-35b31b768707b290d240da47e91f32f445abbf5aea0f12feca2bf8d2bbef711d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Fern phylogeny</topic><topic>Lemmaphyllum</topic><topic>Lepidomicrosorium</topic><topic>Lepisorus</topic><topic>Neocheiropteris</topic><topic>Neolepisorus</topic><topic>Paragramma</topic><topic>Paraphyses</topic><topic>Tricholepidium</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Liang</creatorcontrib><creatorcontrib>Zhou, Xin-Mao</creatorcontrib><creatorcontrib>Liang, Zhen-Long</creatorcontrib><creatorcontrib>Fan, Xue-Ping</creatorcontrib><creatorcontrib>Thi Lu, Ngan</creatorcontrib><creatorcontrib>Song, Min-Shu</creatorcontrib><creatorcontrib>Knapp, Ralf</creatorcontrib><creatorcontrib>Gao, Xin-Fen</creatorcontrib><creatorcontrib>Sun, Hang</creatorcontrib><creatorcontrib>Zhang, Li-Bing</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Molecular phylogenetics and evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Liang</au><au>Zhou, Xin-Mao</au><au>Liang, Zhen-Long</au><au>Fan, Xue-Ping</au><au>Thi Lu, Ngan</au><au>Song, Min-Shu</au><au>Knapp, Ralf</au><au>Gao, Xin-Fen</au><au>Sun, Hang</au><au>Zhang, Li-Bing</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phylogeny and classification of the tribe Lepisoreae (Polypodiaceae; pteridophyta) with the description of a new genus, Ellipinema gen. nov., segregated from Lepisorus</atitle><jtitle>Molecular phylogenetics and evolution</jtitle><addtitle>Mol Phylogenet Evol</addtitle><date>2020-07-01</date><risdate>2020</risdate><volume>148</volume><spage>106803</spage><epage>106803</epage><pages>106803-106803</pages><artnum>106803</artnum><issn>1055-7903</issn><eissn>1095-9513</eissn><abstract>[Display omitted]
•Complete or nearly complete sampling of non-Lepisorus genera is achieved.•All seven genera except Lepisorus in Lepisoreae are confirmed to be monophyletic.•Ellipinema is described as new to maintain the monophyly of Lepisorus.•Relationships of major clades are well resolved and strongly supported.•We propose an eight-genus classification based on the phylogeny, morphology, distribution.
Lepisoroid ferns (tribe Lepisoreae, Polypodiaceae) are arguably one of the most confusing fern groups in Polypodiaceae in terms of delimitation of genera largely because of their simple morphology. Previous molecular studies either had very small taxon sampling of the non-Lepisorus genera and did not well resolve the relationships among these genera, or had a relatively large sampling at species level but the critical species were missing or their relationships were not well resolved. A recent study resolved the newly sampled Lepisorus jakonensis as sister to the remaining genera in Lepisoreae excluding Paragramma, and the authors lumped all the six well recognized genera into Lepisorus. In the present study, to infer a phylogeny we used DNA sequences of five plastid markers (matK, rbcL, rbcL-atpB, rps4 &rps4-trnS, trnL &trnL-F) of 172 accessions representing ca. 44 species of non-Lepisorus genera and 54 accessions representing ca. 50 species of Lepisorus as ingroup, and 10 non-Lepisoreae accessions from the most closely related four genera (Leptochilus, Microsorum, Phymatosorus, and Goniophlebium) in Microsoroideae and one genus (Pyrrosia) in Platycerioideae. Our major results include: (1) All seven currently defined genera except Lepisorus in Lepisoreae are confirmed to be monophyletic; (2) The Lepisorus jakonensis clade is confirmed to be the second earliest diverged lineage in Lepisoreae; (3) Neolepisorus is resolved as sister to the rest in a clade containing all non-Lepisorus genera except Paragramma; (4) Lemmaphyllum is sister to a clade containing Lepidomicrosorium, Neocheiropteris, and Tricholepidium; and (5) Ellipinema gen. nov. is segregated from Lepisorus based on the phylogeny and morphology in order to stabilize the current usage of the existing six non-Lepisorus genera and species names in these genera. A key to all eight genera of Lepisoreae is provided.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>32217168</pmid><doi>10.1016/j.ympev.2020.106803</doi><tpages>1</tpages></addata></record> |
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subjects | Fern phylogeny Lemmaphyllum Lepidomicrosorium Lepisorus Neocheiropteris Neolepisorus Paragramma Paraphyses Tricholepidium |
title | Phylogeny and classification of the tribe Lepisoreae (Polypodiaceae; pteridophyta) with the description of a new genus, Ellipinema gen. nov., segregated from Lepisorus |
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