Peptidyl inhibition of Spt4‐Spt5: Protein‐protein inhibitors for targeting the transcriptional pathway related to C9orf72 expansion repeats

• Published in: Journal of cellular biochemistry 2020-12, Vol.121 (12), p.4922-4930
• Main Authors: Rayevsky, Alexey, Platonov, Maxim, Hurmach, Vasyl, Yakovenko, Anastasia, Volochnyuk, Dmitriy
• Format: Article
• Language: English
• Subjects: Assaying; Computational neuroscience; Crystallography; Dementia disorders; DSIF; Frontotemporal dementia; Huntington's disease; Inhibitors; Kinases; Machado‐Joseph disease; Molecular docking; Molecular dynamics; Neurological diseases; Non-coding RNA; Peptide libraries; Peptides; Proteins; Ribonucleic acid; RNA; Spinocerebellar Ataxia; Spt4; Spt5
• ISSN: 0730-2312; 1097-4644
• DOI: 10.1002/jcb.29820

Spt4/Spt5 is an useful target as it is likely a transcription factor that has implications for long non‐coding RNA repeats related to frontotemporal dementia (FTD) found in the C9orf72 disease pathology. Inhibitors for Spt4/Spt5 using peptides as a starting point for assays as a means for developing small molecules, which could likely lead to therapeutic development for inhibition for Spt4/Spt5 with CNS characteristics. To elucidate the specific steps of identification and modification of key interacting residues from Spt4/Spt5 complex with further effect prediction, a set of different computational methods was applied. Newly characterized, theoretically derived peptides docked on Spt4/Spt5 models, based on X‐ray crystallography sources, allowed us to complete molecular dynamics simulations and docking studies for peptide libraries that give us high confident set of peptides for use to screen for Spt4/Spt5 inhibition. Several peptides with increased specificity to the Spt4/Spt5 interface were found and can be screened in cell‐based assays and enzymatic assays for peptide screens that lead to small molecule campaigns. Spt4/Spt5 comprises an attractive target for neurological diseases, and applying these peptides into a screening campaign will promote the goal of therapeutic searches for FTD drug discovery. Spt4/Spt5 is a useful target since it is likely a transcription factor that has implications for long non‐coding RNA repeats related to frontotemporal dementia found in the C9orf72 disease pathology. Inhibitors for Spt4/Spt5 using peptides as a starting point for assays as a means for developing small molecules could likely lead to therapeutic development for inhibition for Spt4/Spt5 with CNS characteristics. Thus, we elucidated the specific steps of identification and modification of key interacting residues from Spt4/Spt5 complex with further effect prediction. Finally, several potent peptides with increased specificity to the Spt4/Spt5 interface were found and can be screened in cell‐based and enzymatic assays for peptide screens that lead to small molecule campaigns.