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Quantitative Safety Monitoring in Clinical Trials: Application of Multiple Statistical Methodologies for Infrequent Events
Background There are limited quantitative approaches for evaluating rare safety outcomes from controlled clinical trials in either a blinded or unblinded setting. This manuscript demonstrates an application of three statistical methods for quantitative safety monitoring that can be implemented durin...
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Published in: | Therapeutic innovation & regulatory science 2020-09, Vol.54 (5), p.1175-1184 |
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creator | Ye, Jiabu Wen, Shihua Schoenfelder, John Islam, Syed |
description | Background
There are limited quantitative approaches for evaluating rare safety outcomes from controlled clinical trials in either a blinded or unblinded setting. This manuscript demonstrates an application of three statistical methods for quantitative safety monitoring that can be implemented during any phase of a clinical trial, including open-label extension studies.
Methods
An interactive safety monitoring (iSM) tool was developed using R language in the publicly available R-Shiny app and was implemented for three statistical methods of quantitative safety monitoring. These methods are sequential probability ratio test (SPRT), maximized SPRT (MaxSPRT), and Bayesian posterior probability threshold (BPPT). The iSM tool evaluated specific safety signals that incorporated pre-specified background rates or reference risk ratios.
Results
Two sets of blinded clinical trial data were used for case studies to demonstrate the use the iSM tool. Two particular adverse events, myocardial infarction (MI) and serious infection, were monitored. Monte Carlo simulation was conducted to evaluate the operating characteristics of pre-specified parameters. It showed that after adjusting for exposure, the BPPT and MaxSPRT yielded similar results in identifying a pre-specified signals while the SPRT method failed to detect such signals.
Conclusion
Statistical methods shown for the case studies, as well as the application of the user-friendly iSM tool, greatly enhance the quantitative monitoring of safety events of interest in ongoing clinical trials The BPPT and MaxSPRT methods seem more sensitive in picking-up early signals than the SPRT method when the number of safety events is small. |
doi_str_mv | 10.1007/s43441-020-00142-2 |
format | article |
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There are limited quantitative approaches for evaluating rare safety outcomes from controlled clinical trials in either a blinded or unblinded setting. This manuscript demonstrates an application of three statistical methods for quantitative safety monitoring that can be implemented during any phase of a clinical trial, including open-label extension studies.
Methods
An interactive safety monitoring (iSM) tool was developed using R language in the publicly available R-Shiny app and was implemented for three statistical methods of quantitative safety monitoring. These methods are sequential probability ratio test (SPRT), maximized SPRT (MaxSPRT), and Bayesian posterior probability threshold (BPPT). The iSM tool evaluated specific safety signals that incorporated pre-specified background rates or reference risk ratios.
Results
Two sets of blinded clinical trial data were used for case studies to demonstrate the use the iSM tool. Two particular adverse events, myocardial infarction (MI) and serious infection, were monitored. Monte Carlo simulation was conducted to evaluate the operating characteristics of pre-specified parameters. It showed that after adjusting for exposure, the BPPT and MaxSPRT yielded similar results in identifying a pre-specified signals while the SPRT method failed to detect such signals.
Conclusion
Statistical methods shown for the case studies, as well as the application of the user-friendly iSM tool, greatly enhance the quantitative monitoring of safety events of interest in ongoing clinical trials The BPPT and MaxSPRT methods seem more sensitive in picking-up early signals than the SPRT method when the number of safety events is small.</description><identifier>ISSN: 2168-4790</identifier><identifier>EISSN: 2168-4804</identifier><identifier>DOI: 10.1007/s43441-020-00142-2</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Analytical Report ; Bayesian analysis ; Case studies ; Clinical trials ; Computer simulation ; Conditional probability ; Drug Safety and Pharmacovigilance ; Medicine ; Monitoring ; Monte Carlo simulation ; Myocardial infarction ; Pharmacotherapy ; Pharmacy ; Probabilistic methods ; Safety ; Statistical analysis ; Statistical methods ; Statistics</subject><ispartof>Therapeutic innovation & regulatory science, 2020-09, Vol.54 (5), p.1175-1184</ispartof><rights>The Drug Information Association, Inc 2020</rights><rights>The Drug Information Association, Inc 2020.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c303t-5700475cfd76cb0e3fb4e74d9fdbe3e84b5c22afef1083a839e562323c1db92d3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids></links><search><creatorcontrib>Ye, Jiabu</creatorcontrib><creatorcontrib>Wen, Shihua</creatorcontrib><creatorcontrib>Schoenfelder, John</creatorcontrib><creatorcontrib>Islam, Syed</creatorcontrib><title>Quantitative Safety Monitoring in Clinical Trials: Application of Multiple Statistical Methodologies for Infrequent Events</title><title>Therapeutic innovation & regulatory science</title><addtitle>Ther Innov Regul Sci</addtitle><description>Background
There are limited quantitative approaches for evaluating rare safety outcomes from controlled clinical trials in either a blinded or unblinded setting. This manuscript demonstrates an application of three statistical methods for quantitative safety monitoring that can be implemented during any phase of a clinical trial, including open-label extension studies.
Methods
An interactive safety monitoring (iSM) tool was developed using R language in the publicly available R-Shiny app and was implemented for three statistical methods of quantitative safety monitoring. These methods are sequential probability ratio test (SPRT), maximized SPRT (MaxSPRT), and Bayesian posterior probability threshold (BPPT). The iSM tool evaluated specific safety signals that incorporated pre-specified background rates or reference risk ratios.
Results
Two sets of blinded clinical trial data were used for case studies to demonstrate the use the iSM tool. Two particular adverse events, myocardial infarction (MI) and serious infection, were monitored. Monte Carlo simulation was conducted to evaluate the operating characteristics of pre-specified parameters. It showed that after adjusting for exposure, the BPPT and MaxSPRT yielded similar results in identifying a pre-specified signals while the SPRT method failed to detect such signals.
Conclusion
Statistical methods shown for the case studies, as well as the application of the user-friendly iSM tool, greatly enhance the quantitative monitoring of safety events of interest in ongoing clinical trials The BPPT and MaxSPRT methods seem more sensitive in picking-up early signals than the SPRT method when the number of safety events is small.</description><subject>Analytical Report</subject><subject>Bayesian analysis</subject><subject>Case studies</subject><subject>Clinical trials</subject><subject>Computer simulation</subject><subject>Conditional probability</subject><subject>Drug Safety and Pharmacovigilance</subject><subject>Medicine</subject><subject>Monitoring</subject><subject>Monte Carlo simulation</subject><subject>Myocardial infarction</subject><subject>Pharmacotherapy</subject><subject>Pharmacy</subject><subject>Probabilistic methods</subject><subject>Safety</subject><subject>Statistical analysis</subject><subject>Statistical methods</subject><subject>Statistics</subject><issn>2168-4790</issn><issn>2168-4804</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNp9kUtLAzEUhQdRsGj_gKuAGzejN4_pzLgrpWqhRcS6DvNIakqajEmmUH-9aasILryL3BC-c-4lJ0muMNxigPzOM8oYToFACoAZSclJMiB4VKSsAHb6c89LOE-G3q8hVllkOSkGyedLX5mgQhXUVqDXSoqwQwtrVLBOmRVSBk20MqqpNFo6VWl_j8Zdp-NDUNYgK9Gi10F1Oqr3Lj4c2IUI77a12q6U8Ehah2ZGOvHRCxPQdBtPf5mcyegnht_9Inl7mC4nT-n8-XE2Gc_ThgINaZYDsDxrZJuPmhoElTUTOWtL2daCioLVWUNIXFxiKGhV0FJkI0IJbXBbl6SlF8nN0bdzNs73gW-Ub4TWlRG295wwWpQlyzBE9PoPura9M3G7SDEywphkeaTIkWqc9d4JyTunNpXbcQx8nwg_JsJjIvyQCCdRRI8i3-0_Vrhf639UX1CWj-s</recordid><startdate>20200901</startdate><enddate>20200901</enddate><creator>Ye, Jiabu</creator><creator>Wen, Shihua</creator><creator>Schoenfelder, John</creator><creator>Islam, Syed</creator><general>Springer International Publishing</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7U7</scope><scope>C1K</scope><scope>K9.</scope><scope>NAPCQ</scope><scope>7X8</scope></search><sort><creationdate>20200901</creationdate><title>Quantitative Safety Monitoring in Clinical Trials: Application of Multiple Statistical Methodologies for Infrequent Events</title><author>Ye, Jiabu ; Wen, Shihua ; Schoenfelder, John ; Islam, Syed</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c303t-5700475cfd76cb0e3fb4e74d9fdbe3e84b5c22afef1083a839e562323c1db92d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Analytical Report</topic><topic>Bayesian analysis</topic><topic>Case studies</topic><topic>Clinical trials</topic><topic>Computer simulation</topic><topic>Conditional probability</topic><topic>Drug Safety and Pharmacovigilance</topic><topic>Medicine</topic><topic>Monitoring</topic><topic>Monte Carlo simulation</topic><topic>Myocardial infarction</topic><topic>Pharmacotherapy</topic><topic>Pharmacy</topic><topic>Probabilistic methods</topic><topic>Safety</topic><topic>Statistical analysis</topic><topic>Statistical methods</topic><topic>Statistics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ye, Jiabu</creatorcontrib><creatorcontrib>Wen, Shihua</creatorcontrib><creatorcontrib>Schoenfelder, John</creatorcontrib><creatorcontrib>Islam, Syed</creatorcontrib><collection>CrossRef</collection><collection>Toxicology Abstracts</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Nursing & Allied Health Premium</collection><collection>MEDLINE - Academic</collection><jtitle>Therapeutic innovation & regulatory science</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ye, Jiabu</au><au>Wen, Shihua</au><au>Schoenfelder, John</au><au>Islam, Syed</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Quantitative Safety Monitoring in Clinical Trials: Application of Multiple Statistical Methodologies for Infrequent Events</atitle><jtitle>Therapeutic innovation & regulatory science</jtitle><stitle>Ther Innov Regul Sci</stitle><date>2020-09-01</date><risdate>2020</risdate><volume>54</volume><issue>5</issue><spage>1175</spage><epage>1184</epage><pages>1175-1184</pages><issn>2168-4790</issn><eissn>2168-4804</eissn><abstract>Background
There are limited quantitative approaches for evaluating rare safety outcomes from controlled clinical trials in either a blinded or unblinded setting. This manuscript demonstrates an application of three statistical methods for quantitative safety monitoring that can be implemented during any phase of a clinical trial, including open-label extension studies.
Methods
An interactive safety monitoring (iSM) tool was developed using R language in the publicly available R-Shiny app and was implemented for three statistical methods of quantitative safety monitoring. These methods are sequential probability ratio test (SPRT), maximized SPRT (MaxSPRT), and Bayesian posterior probability threshold (BPPT). The iSM tool evaluated specific safety signals that incorporated pre-specified background rates or reference risk ratios.
Results
Two sets of blinded clinical trial data were used for case studies to demonstrate the use the iSM tool. Two particular adverse events, myocardial infarction (MI) and serious infection, were monitored. Monte Carlo simulation was conducted to evaluate the operating characteristics of pre-specified parameters. It showed that after adjusting for exposure, the BPPT and MaxSPRT yielded similar results in identifying a pre-specified signals while the SPRT method failed to detect such signals.
Conclusion
Statistical methods shown for the case studies, as well as the application of the user-friendly iSM tool, greatly enhance the quantitative monitoring of safety events of interest in ongoing clinical trials The BPPT and MaxSPRT methods seem more sensitive in picking-up early signals than the SPRT method when the number of safety events is small.</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><doi>10.1007/s43441-020-00142-2</doi><tpages>10</tpages></addata></record> |
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subjects | Analytical Report Bayesian analysis Case studies Clinical trials Computer simulation Conditional probability Drug Safety and Pharmacovigilance Medicine Monitoring Monte Carlo simulation Myocardial infarction Pharmacotherapy Pharmacy Probabilistic methods Safety Statistical analysis Statistical methods Statistics |
title | Quantitative Safety Monitoring in Clinical Trials: Application of Multiple Statistical Methodologies for Infrequent Events |
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