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Genotypic diversity in multi-drug-resistant E. coli isolated from animal feces and Yamuna River water, India, using rep-PCR fingerprinting

Genotypic diversity among multi-drug-resistant (MDR) aquatic E. coli isolated from different sites of Yamuna River was analyzed using repetitive element PCR (rep-PCR) methods viz. ERIC-PCR and (GTG) 5 -PCR and compared with the MDR animal fecal isolates. The 97 E. coli isolates belonging to differen...

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Published in:Environmental monitoring and assessment 2020-11, Vol.192 (11), p.681-681, Article 681
Main Authors: Khare, Neha, Kaushik, Megha, Martin, Juan Pedro, Mohanty, Aparajita, Gulati, Pooja
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description Genotypic diversity among multi-drug-resistant (MDR) aquatic E. coli isolated from different sites of Yamuna River was analyzed using repetitive element PCR (rep-PCR) methods viz. ERIC-PCR and (GTG) 5 -PCR and compared with the MDR animal fecal isolates. The 97 E. coli isolates belonging to different serotypes, phylogroups, and multi-drug resistance patterns were analyzed. High genetic diversity was observed by both the methods; however, (GTG) 5 typing showed higher discriminating potential. Combination of ERIC types (E1–E32) and (GTG) 5 types (G1–G46) generated 77 genotypes. The frequency of genotypes ranged from 0.013 to 0.065. The genotype composition of E. coli isolates was highly diverse at all the sampling sites across Yamuna River except at its entry site in Delhi. The sampling sites under the influence of high anthropogenic activities showed an increase in number of unique genotype isolates. These sites also exhibited high multiple antibiotic resistance (MAR) indexes (above 0.25) suggesting high risk of contamination. Principal coordinate analysis (PCoA) showed limited clustering of genotypes based on the sampling sites. The most frequent genotypes were grouped in the positive zone of both the principal coordinates (PC1 and PC2). The genotypes of most of the animal fecal isolates were unique and occupied a common space in the negative PC1 area forming a separate cluster. High genotypic diversity among the aquatic E. coli and the drain isolates, discharging the untreated municipal waste in the river, was observed, suggesting that the sewage effluents contribute substantially to contamination of this river system than animal feces. The presence of such a high diversity among the MDR E. coli isolates in the natural river systems is of great public health significance and highlights the need of an efficient surveillance system for better management of Indian natural water bodies.
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subjects Anthropogenic factors
Antibiotic resistance
Antibiotics
Atmospheric Protection/Air Quality Control/Air Pollution
Clustering
Contamination
Disease resistance
DNA
Drug resistance
Drugs
E coli
Earth and Environmental Science
Ecology
Ecotoxicology
Effluents
Environment
Environmental Management
Environmental monitoring
Environmental science
Faeces
Feces
Fingerprinting
Genetic diversity
Genetic variation
Genotypes
Human influences
Methods
Monitoring/Environmental Analysis
Multidrug resistance
Municipal wastes
Nucleotide sequence
PCR
Public health
River systems
River water
Rivers
Sampling
Serotypes
Sewage
Sewage effluents
Sewerage
title Genotypic diversity in multi-drug-resistant E. coli isolated from animal feces and Yamuna River water, India, using rep-PCR fingerprinting
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