Identification of a large dataset of SNPs in hair‐fin anchovy (Setipinna tenuifilis) based on RAD‐seq

Summary Hair‐fin anchovy (Setipinna tenuifilis) is an economically important fish distributed in the West Indian Ocean and the Northwest Pacific Ocean. In this study, 154 individuals in eight populations of S. tenuifilis were sequenced and 850 million raw reads were obtained using restriction site‐a...

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Bibliographic Details
Published in:Animal genetics 2021-06, Vol.52 (3), p.371-374
Main Authors: Peng, Y., Li, J. S., Zhang, K., Liu, Y. F., Li, X. P., Zhang, H., Gong, L., Liu, L. Q., Lü, Z. M., Liu, B. J.
Format: Article
Language:English
Subjects:
Anchovies
Datasets
Deoxyribonucleic acid
DNA
DNA sequencing
Economic importance
genetic differentiation
Genetic diversity
Genetic resources
Hair
hair‐fin anchovy (Setipinna tenuifilis)
Population genetics
Populations
RAD‐seq
Setipinna tenuifilis
Single-nucleotide polymorphism
SNP
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Summary:Summary Hair‐fin anchovy (Setipinna tenuifilis) is an economically important fish distributed in the West Indian Ocean and the Northwest Pacific Ocean. In this study, 154 individuals in eight populations of S. tenuifilis were sequenced and 850 million raw reads were obtained using restriction site‐associated DNA sequencing (RAD‐seq). First, we identified 14 012 044 hypothetical SNP markers. A dataset of 199 903 high‐quality SNPs was collected after further screening. These SNPs have a strong ability to test the genetic diversity between the eight populations. The differentiation and genetic law between samples were explored based on SNPs in populations of S. tenuifilis. The results of this study will provide data for protecting the genetic resources of the species.
ISSN:0268-9146
1365-2052
DOI:10.1111/age.13062