Schumannella soli sp. nov., a novel actinomycete isolated from mangrove soil by in situ cultivation

A novel actinobacterial strain, designated 10F1D-1 T , was isolated from soil sample collected from Futian mangrove nature reserve, China using of the in situ cultivation technique. Preliminary analysis based on the 16S rRNA gene sequence revealed that strain 10F1D-1 T was the member of genus Schuma...

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Published in:Antonie van Leeuwenhoek 2021-10, Vol.114 (10), p.1657-1667
Main Authors: Li, Feina, Lu, Qinpei, Liao, Shuilin, Tuo, Li, Liu, Shaowei, Yang, Qin, Shen, Adong, Sun, Chenghang
Format: Article
Language:English
Subjects:
Amino acids
Bioactive compounds
Biomedical and Life Sciences
Cultivation
Cultivation techniques
Deoxyribonucleic acid
DNA
Gene amplification
Gene clusters
Gene sequencing
Genetic testing
Genomes
Genomic analysis
Hybridization
Laboratories
Life Sciences
Medical Microbiology
Metabolites
Microbiology
Microorganisms
Nature reserves
New species
Nucleotides
Original Paper
Osmoprotectants
Pediatrics
Phylogenetics
Phylogeny
Plant Sciences
Proteomes
Respiratory diseases
rRNA 16S
Secondary metabolites
Soil Science & Conservation
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Shen, Adong
Sun, Chenghang
description A novel actinobacterial strain, designated 10F1D-1 T , was isolated from soil sample collected from Futian mangrove nature reserve, China using of the in situ cultivation technique. Preliminary analysis based on the 16S rRNA gene sequence revealed that strain 10F1D-1 T was the member of genus Schumannella with sharing highest sequence similarity (99.7%) to Schumannella luteola DSM 23141 T . Phylogenetic analyses based on 16S rRNA gene sequences and core proteome consistently exhibited that strain 10F1D-1 T formed a monophyletic clade with Schumannella luteola DSM 23141 T . Comparative genomic analyses clearly separated strain 10F1D-1 T from the only species of the genus Schumannella based on average nucleotide identity (ANI), average amino acid identity (AAI) and digital DNA-DNA hybridization (dDDH) values below the thresholds for species delineation. The genome of strain 10F1D-1 T contains the biosynthetic gene clusters for osmoprotectants to adapt to the salt environment of mangrove. Strain 10F1D-1 T also contains the biosynthetic gene clusters for bioactive compounds as secondary metabolites. On the basis of the polyphasic analysis, strain 10F1D-1 T is considered to represent a novel species of the genus Schumannella , for which the name Schumannella soli sp. nov. (type strain 10F1D-1 T  = CGMCC1.16699 T  = JCM 33146 T ) is proposed.
doi_str_mv 10.1007/s10482-021-01631-6
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Preliminary analysis based on the 16S rRNA gene sequence revealed that strain 10F1D-1 T was the member of genus Schumannella with sharing highest sequence similarity (99.7%) to Schumannella luteola DSM 23141 T . Phylogenetic analyses based on 16S rRNA gene sequences and core proteome consistently exhibited that strain 10F1D-1 T formed a monophyletic clade with Schumannella luteola DSM 23141 T . Comparative genomic analyses clearly separated strain 10F1D-1 T from the only species of the genus Schumannella based on average nucleotide identity (ANI), average amino acid identity (AAI) and digital DNA-DNA hybridization (dDDH) values below the thresholds for species delineation. The genome of strain 10F1D-1 T contains the biosynthetic gene clusters for osmoprotectants to adapt to the salt environment of mangrove. Strain 10F1D-1 T also contains the biosynthetic gene clusters for bioactive compounds as secondary metabolites. On the basis of the polyphasic analysis, strain 10F1D-1 T is considered to represent a novel species of the genus Schumannella , for which the name Schumannella soli sp. nov. (type strain 10F1D-1 T  = CGMCC1.16699 T  = JCM 33146 T ) is proposed.</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><doi>10.1007/s10482-021-01631-6</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0001-6813-8274</orcidid></addata></record>
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subjects Amino acids
Bioactive compounds
Biomedical and Life Sciences
Cultivation
Cultivation techniques
Deoxyribonucleic acid
DNA
Gene amplification
Gene clusters
Gene sequencing
Genetic testing
Genomes
Genomic analysis
Hybridization
Laboratories
Life Sciences
Medical Microbiology
Metabolites
Microbiology
Microorganisms
Nature reserves
New species
Nucleotides
Original Paper
Osmoprotectants
Pediatrics
Phylogenetics
Phylogeny
Plant Sciences
Proteomes
Respiratory diseases
rRNA 16S
Secondary metabolites
Soil Science & Conservation
title Schumannella soli sp. nov., a novel actinomycete isolated from mangrove soil by in situ cultivation
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