Microorganisms Profile and Antimicrobial Resistance Pattern in Outborn Neonates in Northern India: A Hospital-Based Observational Study

• Published in: Journal of tropical pediatrics (1980) 2021-07, Vol.67 (3)
• Main Authors: Dhir, Shashi Kant, Sundaram, Venkataseshan, Gautam, Vikas, Munda, Vimal Singh, Tiewsoh, Jutang Babat Ain, Angurana, Suresh Kumar, Kumar, Jogender, Saini, Shiv Sajan, Dutta, Sourabh, Kumar, Praveen
• Format: Article
• Language: English
• ISSN: 0142-6338; 1465-3664
• DOI: 10.1093/tropej/fmab068

Abstract Background Neonates born somewhere else (outborn) and treated in a referral centre have different microbiological profile. We report the microorganism’s profile and antimicrobial resistance (AMR) in blood culture proven sepsis in outborn neonates. Methods Culture positive neonatal sepsis from a neonatal unit of a referral institute catering to outborn neonates was studied over an 18 months duration. Data from the hospital information system were used to analyse the culture positivity rates, the spectrum of the microorganisms isolated and AMR pattern. Results Out of 5258 admitted neonates, 3687 blood samples were sent for suspect sepsis. The blood cultures were positive in 537 (14.6%) samples from 514 neonates. Gram-positive cocci (GPC) were the most common [240 (45%)] followed by gram-negative bacilli (GNB) [233 (43.4%)] and fungi [64 (11.9%)]. Coagulase negative staphylococcus (CONS) contributed to two-thirds of GPC followed by Klebsiella [93 (17.3%)] and Acinetobacter species [52 (9.7%)]. In 403 (75%) neonates, organisms grew in the samples sent at or within 24 h of admission. The case fatality rate was significantly higher in those with culture positive sepsis. The resistance to meropenem and imipenem was documented in 57.1% and 49.7%, respectively and 48% of the GNB was multidrug resistant. Conclusions CONS followed by Klebsiella species were the most common organisms isolated. Three-fourths of the neonates had organisms grown at or within 24 h from admission. More than half of the GNB were multidrug resistant. The case fatality rate was significantly higher in those with culture positive sepsis. Lay Summary Sepsis is the third most common cause of neonatal mortality globally. Outborn neonates differ in their microorganisms’ profile and antimicrobial resistance (AMR) pattern in comparison to inborn neonates. In this study, we report the microorganisms profile and their AMR pattern in blood culture proven sepsis in a large cohort of outborn (extramural) neonates admitted to the index institute. We have also presented the state-wise profile and have compared their AMR pattern. Out of the 5258 admitted neonates, 3687 blood samples were sent for culture for suspect sepsis. The blood cultures were positive in 537 (14.6%) samples from 514 neonates. Coagulase-negative staphylococcus (CONS) followed by Klebsiella species were the most common organisms isolated from this large cohort of outborn neonates. More than 75% of the neonates grew the organisms