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Comparative transcriptomic analysis of the brain in Takifugu rubripes shows its tolerance to acute hypoxia
Hypoxia in water that caused by reduced levels of oxygen occurred frequently, due to the complex aquatic environment. Hypoxia tolerance for fish depends on a complete set of coping mechanisms such as oxygen perception and gene-protein interaction regulation. The present study examined the short-term...
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Published in: | Fish physiology and biochemistry 2021-10, Vol.47 (5), p.1669-1685 |
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container_end_page | 1685 |
container_issue | 5 |
container_start_page | 1669 |
container_title | Fish physiology and biochemistry |
container_volume | 47 |
creator | Bao, Mingxiu Shang, Fengqin Liu, Fujun Hu, Ziwen Wang, Shengnan Yang, Xiao Yu, Yundeng Zhang, Hongbin Jiang, Chihang Jiang, Jielan Liu, Yang Wang, Xiuli |
description | Hypoxia in water that caused by reduced levels of oxygen occurred frequently, due to the complex aquatic environment. Hypoxia tolerance for fish depends on a complete set of coping mechanisms such as oxygen perception and gene-protein interaction regulation. The present study examined the short-term effects of hypoxia on the brain in
Takifugu rubripes
. We sequenced the transcriptomes of the brain in
T. rubripes
to study their response mechanism to acute hypoxia. A total of 167 genes were differentially expressed in the brain of
T. rubripes
after exposed to acute hypoxia. Gene ontology and KEGG enrichment analysis indicated that hypoxia could cause metabolic and neurological changes, showing the clues of their adaptation to acute hypoxia. As the most complex and important organ, the brain of
T. rubripes
might be able to create a self-protection mechanism to resist or reduce damage caused by acute hypoxia stress. |
doi_str_mv | 10.1007/s10695-021-01008-6 |
format | article |
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Takifugu rubripes
. We sequenced the transcriptomes of the brain in
T. rubripes
to study their response mechanism to acute hypoxia. A total of 167 genes were differentially expressed in the brain of
T. rubripes
after exposed to acute hypoxia. Gene ontology and KEGG enrichment analysis indicated that hypoxia could cause metabolic and neurological changes, showing the clues of their adaptation to acute hypoxia. As the most complex and important organ, the brain of
T. rubripes
might be able to create a self-protection mechanism to resist or reduce damage caused by acute hypoxia stress.</description><identifier>ISSN: 0920-1742</identifier><identifier>EISSN: 1573-5168</identifier><identifier>DOI: 10.1007/s10695-021-01008-6</identifier><identifier>PMID: 34460041</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Animal Anatomy ; Animal Biochemistry ; Animal Physiology ; Animals ; Aquatic environment ; Biomedical and Life Sciences ; Brain ; Fish ; Freshwater & Marine Ecology ; Genes ; Histology ; Hypoxia ; Hypoxia - genetics ; Life Sciences ; Morphology ; Oxygen ; Takifugu - genetics ; Takifugu rubripes ; Transcriptome ; Transcriptomes ; Zoology</subject><ispartof>Fish physiology and biochemistry, 2021-10, Vol.47 (5), p.1669-1685</ispartof><rights>The Author(s), under exclusive licence to Springer Nature B.V. 2021</rights><rights>2021. The Author(s), under exclusive licence to Springer Nature B.V.</rights><rights>The Author(s), under exclusive licence to Springer Nature B.V. 2021.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c419t-60db1d8084c53bda4e17548e9014bbfbe2e9f1cc917472662ccac8161d6d8e5a3</citedby><cites>FETCH-LOGICAL-c419t-60db1d8084c53bda4e17548e9014bbfbe2e9f1cc917472662ccac8161d6d8e5a3</cites><orcidid>0000-0002-8195-7706</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27923,27924</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/34460041$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Bao, Mingxiu</creatorcontrib><creatorcontrib>Shang, Fengqin</creatorcontrib><creatorcontrib>Liu, Fujun</creatorcontrib><creatorcontrib>Hu, Ziwen</creatorcontrib><creatorcontrib>Wang, Shengnan</creatorcontrib><creatorcontrib>Yang, Xiao</creatorcontrib><creatorcontrib>Yu, Yundeng</creatorcontrib><creatorcontrib>Zhang, Hongbin</creatorcontrib><creatorcontrib>Jiang, Chihang</creatorcontrib><creatorcontrib>Jiang, Jielan</creatorcontrib><creatorcontrib>Liu, Yang</creatorcontrib><creatorcontrib>Wang, Xiuli</creatorcontrib><title>Comparative transcriptomic analysis of the brain in Takifugu rubripes shows its tolerance to acute hypoxia</title><title>Fish physiology and biochemistry</title><addtitle>Fish Physiol Biochem</addtitle><addtitle>Fish Physiol Biochem</addtitle><description>Hypoxia in water that caused by reduced levels of oxygen occurred frequently, due to the complex aquatic environment. Hypoxia tolerance for fish depends on a complete set of coping mechanisms such as oxygen perception and gene-protein interaction regulation. The present study examined the short-term effects of hypoxia on the brain in
Takifugu rubripes
. We sequenced the transcriptomes of the brain in
T. rubripes
to study their response mechanism to acute hypoxia. A total of 167 genes were differentially expressed in the brain of
T. rubripes
after exposed to acute hypoxia. Gene ontology and KEGG enrichment analysis indicated that hypoxia could cause metabolic and neurological changes, showing the clues of their adaptation to acute hypoxia. As the most complex and important organ, the brain of
T. rubripes
might be able to create a self-protection mechanism to resist or reduce damage caused by acute hypoxia stress.</description><subject>Animal Anatomy</subject><subject>Animal Biochemistry</subject><subject>Animal Physiology</subject><subject>Animals</subject><subject>Aquatic environment</subject><subject>Biomedical and Life Sciences</subject><subject>Brain</subject><subject>Fish</subject><subject>Freshwater & Marine Ecology</subject><subject>Genes</subject><subject>Histology</subject><subject>Hypoxia</subject><subject>Hypoxia - genetics</subject><subject>Life Sciences</subject><subject>Morphology</subject><subject>Oxygen</subject><subject>Takifugu - genetics</subject><subject>Takifugu rubripes</subject><subject>Transcriptome</subject><subject>Transcriptomes</subject><subject>Zoology</subject><issn>0920-1742</issn><issn>1573-5168</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><recordid>eNp9kcFu1DAURS0EotPCD7BAlth0E3jPcZxkWY1ailSJTVlbjuN0PCRx6ufQzt_jMgUkFkiWLNnnHuv5MvYO4SMC1J8IQbVVAQILyAdNoV6wDVZ1WVSompdsA62AAmspTtgp0R4A2lrha3ZSSqkAJG7YfhumxUST_A_HUzQz2eiXFCZvuZnNeCBPPAw87RzvovEzz-vWfPfDerfyuHaZdsRpFx6I-0Q8hdFljc22wI1dk-O7wxIevXnDXg1mJPf2eT9j364ub7fXxc3Xz1-2FzeFldimQkHfYd9AI21Vdr2RDutKNq4FlF03dE64dkBr2zxYLZQS1hrboMJe9Y2rTHnGzo_eJYb71VHSkyfrxtHMLqykRZVDCivAjH74B92HNeaxn6i6FihVKTIljpSNgSi6QS_RTyYeNIJ-akIfm9C5Cf2rCa1y6P2zeu0m1_-J_P76DJRHgPLVfOfi37f_o_0JzYOU4g</recordid><startdate>20211001</startdate><enddate>20211001</enddate><creator>Bao, Mingxiu</creator><creator>Shang, Fengqin</creator><creator>Liu, Fujun</creator><creator>Hu, Ziwen</creator><creator>Wang, Shengnan</creator><creator>Yang, Xiao</creator><creator>Yu, Yundeng</creator><creator>Zhang, Hongbin</creator><creator>Jiang, Chihang</creator><creator>Jiang, Jielan</creator><creator>Liu, Yang</creator><creator>Wang, Xiuli</creator><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QH</scope><scope>7QP</scope><scope>7QR</scope><scope>7TK</scope><scope>7TM</scope><scope>7TN</scope><scope>7U7</scope><scope>7UA</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>BKSAR</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>F1W</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H95</scope><scope>H98</scope><scope>H99</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>L.F</scope><scope>L.G</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PCBAR</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-8195-7706</orcidid></search><sort><creationdate>20211001</creationdate><title>Comparative transcriptomic analysis of the brain in Takifugu rubripes shows its tolerance to acute hypoxia</title><author>Bao, Mingxiu ; Shang, Fengqin ; Liu, Fujun ; Hu, Ziwen ; Wang, Shengnan ; Yang, Xiao ; Yu, Yundeng ; Zhang, Hongbin ; Jiang, Chihang ; Jiang, Jielan ; Liu, Yang ; Wang, Xiuli</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c419t-60db1d8084c53bda4e17548e9014bbfbe2e9f1cc917472662ccac8161d6d8e5a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Animal Anatomy</topic><topic>Animal Biochemistry</topic><topic>Animal Physiology</topic><topic>Animals</topic><topic>Aquatic environment</topic><topic>Biomedical and Life Sciences</topic><topic>Brain</topic><topic>Fish</topic><topic>Freshwater & Marine Ecology</topic><topic>Genes</topic><topic>Histology</topic><topic>Hypoxia</topic><topic>Hypoxia - 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Academic</collection><jtitle>Fish physiology and biochemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Bao, Mingxiu</au><au>Shang, Fengqin</au><au>Liu, Fujun</au><au>Hu, Ziwen</au><au>Wang, Shengnan</au><au>Yang, Xiao</au><au>Yu, Yundeng</au><au>Zhang, Hongbin</au><au>Jiang, Chihang</au><au>Jiang, Jielan</au><au>Liu, Yang</au><au>Wang, Xiuli</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Comparative transcriptomic analysis of the brain in Takifugu rubripes shows its tolerance to acute hypoxia</atitle><jtitle>Fish physiology and biochemistry</jtitle><stitle>Fish Physiol Biochem</stitle><addtitle>Fish Physiol Biochem</addtitle><date>2021-10-01</date><risdate>2021</risdate><volume>47</volume><issue>5</issue><spage>1669</spage><epage>1685</epage><pages>1669-1685</pages><issn>0920-1742</issn><eissn>1573-5168</eissn><abstract>Hypoxia in water that caused by reduced levels of oxygen occurred frequently, due to the complex aquatic environment. Hypoxia tolerance for fish depends on a complete set of coping mechanisms such as oxygen perception and gene-protein interaction regulation. The present study examined the short-term effects of hypoxia on the brain in
Takifugu rubripes
. We sequenced the transcriptomes of the brain in
T. rubripes
to study their response mechanism to acute hypoxia. A total of 167 genes were differentially expressed in the brain of
T. rubripes
after exposed to acute hypoxia. Gene ontology and KEGG enrichment analysis indicated that hypoxia could cause metabolic and neurological changes, showing the clues of their adaptation to acute hypoxia. As the most complex and important organ, the brain of
T. rubripes
might be able to create a self-protection mechanism to resist or reduce damage caused by acute hypoxia stress.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><pmid>34460041</pmid><doi>10.1007/s10695-021-01008-6</doi><tpages>17</tpages><orcidid>https://orcid.org/0000-0002-8195-7706</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Animal Anatomy Animal Biochemistry Animal Physiology Animals Aquatic environment Biomedical and Life Sciences Brain Fish Freshwater & Marine Ecology Genes Histology Hypoxia Hypoxia - genetics Life Sciences Morphology Oxygen Takifugu - genetics Takifugu rubripes Transcriptome Transcriptomes Zoology |
title | Comparative transcriptomic analysis of the brain in Takifugu rubripes shows its tolerance to acute hypoxia |
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