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Population genetics of Sambar (Rusa unicolor) from the Western Himalayas: preliminary findings
Background The sambar ( Rusa unicolor ) is one of the largest deer distributed across diverse habitats of India and threatened due to habitat loss, changes in the land-use patterns, illegal poaching, and anthropogenic disturbances. Here, we report the first population genetics account of sambar deer...
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| Published in: | Molecular biology reports 2022, Vol.49 (1), p.811-816 |
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| Main Authors: | , , , , , , |
| Format: | Article |
| Language: | English |
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| cites | cdi_FETCH-LOGICAL-c375t-f1f8134ce67263399e548682a3589c1f800c05daff20ac8eaa99d1153b9d2ff13 |
| container_end_page | 816 |
| container_issue | 1 |
| container_start_page | 811 |
| container_title | Molecular biology reports |
| container_volume | 49 |
| creator | Singh, Vinaya Kumar Joshi, Bheem Dutt Bhat, Gul Jabin Singh, Sujeet Kumar Chandra, Kailash Sharma, Lalit Kumar Thakur, Mukesh |
| description | Background
The sambar (
Rusa unicolor
) is one of the largest deer distributed across diverse habitats of India and threatened due to habitat loss, changes in the land-use patterns, illegal poaching, and anthropogenic disturbances. Here, we report the first population genetics account of sambar deer from the Western Himalayas.
Methods and results
We observed relatively compromised genetic diversity (π = 0.0008 ± 0.0006 at mtDNA and Ho = 0.499 ± 0.056 at nDNA). We identified 60 unique individuals using a select panel of seven loci (P
ID
sib cum 1.60E-03). Bayesian skyline plot showed a stable demographic history since the past 8 kyr with a decline in recent years. The population lacked genetic structuring, likely due to the contiguous distribution and large dispersal patterns of sambar.
Conclusion
The preliminary findings are valuable in exploring the utility of genetic diversity in monitoring the sambar population, estimating density following capture-recapture analysis, and aid to the conservation planning of sambar in large landscapes. |
| doi_str_mv | 10.1007/s11033-021-06845-5 |
| format | article |
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The sambar (
Rusa unicolor
) is one of the largest deer distributed across diverse habitats of India and threatened due to habitat loss, changes in the land-use patterns, illegal poaching, and anthropogenic disturbances. Here, we report the first population genetics account of sambar deer from the Western Himalayas.
Methods and results
We observed relatively compromised genetic diversity (π = 0.0008 ± 0.0006 at mtDNA and Ho = 0.499 ± 0.056 at nDNA). We identified 60 unique individuals using a select panel of seven loci (P
ID
sib cum 1.60E-03). Bayesian skyline plot showed a stable demographic history since the past 8 kyr with a decline in recent years. The population lacked genetic structuring, likely due to the contiguous distribution and large dispersal patterns of sambar.
Conclusion
The preliminary findings are valuable in exploring the utility of genetic diversity in monitoring the sambar population, estimating density following capture-recapture analysis, and aid to the conservation planning of sambar in large landscapes.</description><identifier>ISSN: 0301-4851</identifier><identifier>EISSN: 1573-4978</identifier><identifier>DOI: 10.1007/s11033-021-06845-5</identifier><identifier>PMID: 34668102</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Animal Anatomy ; Animal Biochemistry ; Bayesian analysis ; Biomedical and Life Sciences ; Capture-recapture studies ; Dispersal ; Genetic diversity ; Histology ; Land use ; Life Sciences ; Mitochondrial DNA ; Morphology ; Poaching ; Population decline ; Population density ; Population genetics ; Rusa unicolor ; Short Communication</subject><ispartof>Molecular biology reports, 2022, Vol.49 (1), p.811-816</ispartof><rights>The Author(s), under exclusive licence to Springer Nature B.V. 2021</rights><rights>2021. The Author(s), under exclusive licence to Springer Nature B.V.</rights><rights>The Author(s), under exclusive licence to Springer Nature B.V. 2021.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-f1f8134ce67263399e548682a3589c1f800c05daff20ac8eaa99d1153b9d2ff13</citedby><cites>FETCH-LOGICAL-c375t-f1f8134ce67263399e548682a3589c1f800c05daff20ac8eaa99d1153b9d2ff13</cites><orcidid>0000-0003-2609-7579</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/34668102$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Singh, Vinaya Kumar</creatorcontrib><creatorcontrib>Joshi, Bheem Dutt</creatorcontrib><creatorcontrib>Bhat, Gul Jabin</creatorcontrib><creatorcontrib>Singh, Sujeet Kumar</creatorcontrib><creatorcontrib>Chandra, Kailash</creatorcontrib><creatorcontrib>Sharma, Lalit Kumar</creatorcontrib><creatorcontrib>Thakur, Mukesh</creatorcontrib><title>Population genetics of Sambar (Rusa unicolor) from the Western Himalayas: preliminary findings</title><title>Molecular biology reports</title><addtitle>Mol Biol Rep</addtitle><addtitle>Mol Biol Rep</addtitle><description>Background
The sambar (
Rusa unicolor
) is one of the largest deer distributed across diverse habitats of India and threatened due to habitat loss, changes in the land-use patterns, illegal poaching, and anthropogenic disturbances. Here, we report the first population genetics account of sambar deer from the Western Himalayas.
Methods and results
We observed relatively compromised genetic diversity (π = 0.0008 ± 0.0006 at mtDNA and Ho = 0.499 ± 0.056 at nDNA). We identified 60 unique individuals using a select panel of seven loci (P
ID
sib cum 1.60E-03). Bayesian skyline plot showed a stable demographic history since the past 8 kyr with a decline in recent years. The population lacked genetic structuring, likely due to the contiguous distribution and large dispersal patterns of sambar.
Conclusion
The preliminary findings are valuable in exploring the utility of genetic diversity in monitoring the sambar population, estimating density following capture-recapture analysis, and aid to the conservation planning of sambar in large landscapes.</description><subject>Animal Anatomy</subject><subject>Animal Biochemistry</subject><subject>Bayesian analysis</subject><subject>Biomedical and Life Sciences</subject><subject>Capture-recapture studies</subject><subject>Dispersal</subject><subject>Genetic diversity</subject><subject>Histology</subject><subject>Land use</subject><subject>Life Sciences</subject><subject>Mitochondrial DNA</subject><subject>Morphology</subject><subject>Poaching</subject><subject>Population decline</subject><subject>Population density</subject><subject>Population genetics</subject><subject>Rusa unicolor</subject><subject>Short Communication</subject><issn>0301-4851</issn><issn>1573-4978</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><recordid>eNp9kD1vFDEQhq0IRI6DP0CBLKUJxZIZf-x600VRIEiRQHyIDsvntQ9Hu_bF3i3u38dwCUgUVFPMM-_MPIS8QniLAN1ZQQTOG2DYQKuEbOQRWaHseCP6Tj0hK-CAjVASj8nzUm4BQGAnn5FjLtpWIbAV-fEp7ZbRzCFFunXRzcEWmjz9YqaNyfT081IMXWKwaUz5DfU5TXT-6eh3V2aXI70OkxnN3pRzustuDFOIJu-pD3EIcVtekKfejMW9fKhr8u3d1dfL6-bm4_sPlxc3jeWdnBuPXiEX1rUdaznveyeFahUzXKre1iaABTkY7xkYq5wxfT8gSr7pB-Y98jU5PeTucrpb6m16CsW6cTTRpaVoJpUAVCD7ip78g96mJcd6nWYtKq6YqFbXhB0om1Mp2Xm9y_XVvNcI-pd9fbCvq339276Wdej1Q_SymdzwZ-RRdwX4ASi1Fbcu_939n9h7trCPCg</recordid><startdate>2022</startdate><enddate>2022</enddate><creator>Singh, Vinaya Kumar</creator><creator>Joshi, Bheem Dutt</creator><creator>Bhat, Gul Jabin</creator><creator>Singh, Sujeet Kumar</creator><creator>Chandra, Kailash</creator><creator>Sharma, Lalit Kumar</creator><creator>Thakur, Mukesh</creator><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-2609-7579</orcidid></search><sort><creationdate>2022</creationdate><title>Population genetics of Sambar (Rusa unicolor) from the Western Himalayas: preliminary findings</title><author>Singh, Vinaya Kumar ; Joshi, Bheem Dutt ; Bhat, Gul Jabin ; Singh, Sujeet Kumar ; Chandra, Kailash ; Sharma, Lalit Kumar ; Thakur, Mukesh</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-f1f8134ce67263399e548682a3589c1f800c05daff20ac8eaa99d1153b9d2ff13</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Animal Anatomy</topic><topic>Animal Biochemistry</topic><topic>Bayesian analysis</topic><topic>Biomedical and Life Sciences</topic><topic>Capture-recapture studies</topic><topic>Dispersal</topic><topic>Genetic diversity</topic><topic>Histology</topic><topic>Land use</topic><topic>Life Sciences</topic><topic>Mitochondrial DNA</topic><topic>Morphology</topic><topic>Poaching</topic><topic>Population decline</topic><topic>Population density</topic><topic>Population genetics</topic><topic>Rusa unicolor</topic><topic>Short Communication</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Singh, Vinaya Kumar</creatorcontrib><creatorcontrib>Joshi, Bheem Dutt</creatorcontrib><creatorcontrib>Bhat, Gul Jabin</creatorcontrib><creatorcontrib>Singh, Sujeet Kumar</creatorcontrib><creatorcontrib>Chandra, Kailash</creatorcontrib><creatorcontrib>Sharma, Lalit Kumar</creatorcontrib><creatorcontrib>Thakur, Mukesh</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>ProQuest Health and Medical</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>ProQuest Science Journals</collection><collection>ProQuest Biological Science Journals</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Molecular biology reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Singh, Vinaya Kumar</au><au>Joshi, Bheem Dutt</au><au>Bhat, Gul Jabin</au><au>Singh, Sujeet Kumar</au><au>Chandra, Kailash</au><au>Sharma, Lalit Kumar</au><au>Thakur, Mukesh</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Population genetics of Sambar (Rusa unicolor) from the Western Himalayas: preliminary findings</atitle><jtitle>Molecular biology reports</jtitle><stitle>Mol Biol Rep</stitle><addtitle>Mol Biol Rep</addtitle><date>2022</date><risdate>2022</risdate><volume>49</volume><issue>1</issue><spage>811</spage><epage>816</epage><pages>811-816</pages><issn>0301-4851</issn><eissn>1573-4978</eissn><abstract>Background
The sambar (
Rusa unicolor
) is one of the largest deer distributed across diverse habitats of India and threatened due to habitat loss, changes in the land-use patterns, illegal poaching, and anthropogenic disturbances. Here, we report the first population genetics account of sambar deer from the Western Himalayas.
Methods and results
We observed relatively compromised genetic diversity (π = 0.0008 ± 0.0006 at mtDNA and Ho = 0.499 ± 0.056 at nDNA). We identified 60 unique individuals using a select panel of seven loci (P
ID
sib cum 1.60E-03). Bayesian skyline plot showed a stable demographic history since the past 8 kyr with a decline in recent years. The population lacked genetic structuring, likely due to the contiguous distribution and large dispersal patterns of sambar.
Conclusion
The preliminary findings are valuable in exploring the utility of genetic diversity in monitoring the sambar population, estimating density following capture-recapture analysis, and aid to the conservation planning of sambar in large landscapes.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><pmid>34668102</pmid><doi>10.1007/s11033-021-06845-5</doi><tpages>6</tpages><orcidid>https://orcid.org/0000-0003-2609-7579</orcidid></addata></record> |
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| ispartof | Molecular biology reports, 2022, Vol.49 (1), p.811-816 |
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| language | eng |
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| subjects | Animal Anatomy Animal Biochemistry Bayesian analysis Biomedical and Life Sciences Capture-recapture studies Dispersal Genetic diversity Histology Land use Life Sciences Mitochondrial DNA Morphology Poaching Population decline Population density Population genetics Rusa unicolor Short Communication |
| title | Population genetics of Sambar (Rusa unicolor) from the Western Himalayas: preliminary findings |
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