Amide-based xanthine oxidase inhibitors bearing an N-(1-alkyl-3-cyano-1H-indol-5-yl) moiety: Design, synthesis and structure-activity relationship investigation

• Published in: Bioorganic chemistry 2021-12, Vol.117, p.105417-105417, Article 105417
• Main Authors: Zhang, Ting-jian, Tu, Shun, Zhang, Xu, Wang, Qiu-yin, Hu, Sen-sen, Zhang, Yi, Zhang, Zhen-hao, Wang, Zhao-ran, Meng, Fan-hao
• Format: Article
• Language: English
• Subjects: Amide; Amides - chemistry; Amides - metabolism; Amides - pharmacology; Animals; Cattle; Dose-Response Relationship, Drug; Drug Design; Enzyme Inhibitors - chemistry; Enzyme Inhibitors - metabolism; Enzyme Inhibitors - pharmacology; Female; Indoles - chemistry; Indoles - pharmacology; Male; Microsomes, Liver - chemistry; Microsomes, Liver - metabolism; Milk - enzymology; Models, Molecular; Molecular Structure; Rats; Rats, Sprague-Dawley; SAR; Structure-Activity Relationship; Xanthine Oxidase - antagonists & inhibitors; Xanthine Oxidase - metabolism; Xanthine oxidase inhibitor
• ISSN: 0045-2068; 1090-2120
• DOI: 10.1016/j.bioorg.2021.105417

[Display omitted] •SAR investigation on the amide-based XO inhibitors was performed.•N-(1-propyl-3-cyano-1H-indol-5-yl)-1H-imidazole-4-carboxamide (a6) was identified as most potent compound.•Molecular docking and molecular dynamics provided reasonable interaction modes.•Oral administration of a6 could effectively reduce serum uric acid levels in an acute hyperuricemia rat model. Our previous work identified a promising isonicotinamide based xanthine oxidase (XO) inhibitor, N-(3-cyano-4-((2-cyanobenzyl)oxy)phenyl)isonicotinamide (1), and concluded that amide is an effective linker in exploring the XO inhibitor chemical space that is completely different from the five-membered ring framework of febuxostat and topiroxostat. Indole, an endogenous bioactive substance and a popular drug construction fragment, was involved in the structural optimization campaign of the present effort. After the installation of some functional groups, N-(1-alkyl-3-cyano-1H-indol-5-yl) was generated and employed to mend the missing H-bond interaction between the 3′-cyano of 1 and Asn768 residue of XO by shortening their distance. In this context, eight kinds of heterocyclic aromatic amide chemotypes were rationally designed and synthesized to investigate the structure-activity relationship (SAR) of amide-based XO inhibitors. The optimized compound a6 (IC50 = 0.018 μM) exhibits 17.2-fold improved potency than the initial compound 1 (IC50 = 0.31 μM). Its potency is comparable to that of topiroxostat (IC50 = 0.013 μM). Molecular docking and molecular dynamics studies proved the existence of the stable H-bond between the cyano group and the Asn768 residue. Moreover, oral administration of a6 (11.8 mg/kg) could effectively reduce serum uric acid levels in an acute hyperuricemia rat model. Liver microsomal stability assay illustrated that compound a6 possesses well metabolic stability in rat liver microsomes. However, the in vivo potency of a6 was much lower than that of topiroxostat, which may be explained by the poor absorption found in the parallel artificial membrane permeability assay (PAMPA). In addition, 6a has non-cytotoxicity against normal cell lines MCF10A and 16HBE. Taken together, this work culminated in the identification of compound 6a as an excellent lead for further exploration of amide-based XO inhibitors.