Immune and stromal related genes in colon cancer: Analysis of tumour microenvironment based on the cancer genome atlas (TCGA) and gene expression omnibus (GEO) databases

• Published in: Scandinavian journal of immunology 2022-02, Vol.95 (2), p.e13119-n/a
• Main Authors: Wu, Yue, Jia, Haowei, Zhou, Hangyuan, Liu, Xinyu, Sun, Junfeng, Zhou, Xiaoyan, Zhao, Hongchao
• Format: Article
• Language: English
• Subjects: B-Lymphocytes - immunology; Biomarkers, Tumor - genetics; CD4 antigen; CD4-Positive T-Lymphocytes - immunology; CD8 antigen; CD8-Positive T-Lymphocytes - immunology; Colon - pathology; Colon cancer; Colonic Neoplasms - genetics; Colonic Neoplasms - immunology; Colonic Neoplasms - mortality; Colorectal cancer; CXCL12 protein; Databases, Genetic; ESTIMATE algorithm; Gene expression; Gene Expression Regulation, Neoplastic - genetics; Genomes; Humans; immune infiltration; Immune system; Infiltration; Leukocytes (neutrophilic); Lymphocytes B; Lymphocytes T; Macrophages; Macrophages - immunology; Medical prognosis; Metastases; Microenvironments; Neutrophils - immunology; Prognosis; Stromal cells; Stromal Cells - cytology; Stromal Cells - metabolism; Tumor microenvironment; Tumor Microenvironment - genetics; Tumor Microenvironment - immunology; Tumors; tumour microenvironment
• ISSN: 0300-9475; 1365-3083
• DOI: 10.1111/sji.13119

The incidence of colon cancer is amongst the top three in the world. The tumour microenvironment plays an important role in the occurrence and development of colon cancer. Stromal cells and immune cells are the main components of the tumour microenvironment. Our study detected genes, which affected the infiltration of stromal, immune cells and the way they affected the prognosis of colon cancer patients. We found that the colon's immune system had a special way to affect the tumour microenvironment. Moderate infiltration of stromal and immune cells was proved to be important protective factors for colon cancer patients, which has not been found in other tumours. C3, C5, CXCL12, GNAI1, LPAR1, PENK, PYY, SAA1 and SST were the differential expression hub genes of moderate‐stromal and immune score group. They had a more significant correlation with tumour purity and infiltration of B cells, CD8+ T cells, CD4+ T cells, macrophage, neutrophil, democratic cells. The proteins encoded by C3, C5, CXCL12, GNAI1, PENK, PYY, SST were detected in colon cancer cells. These genes had the potential to become markers to predict the prognosis of patients with colon cancer.