Elevated expression of rsmI can act as a reporter of aminoglycoside resistance in Escherichia coli using kanamycin as signal molecule

• Published in: Infection, genetics and evolution genetics and evolution, 2022-03, Vol.98, p.105229-105229, Article 105229
• Main Authors: Wangkheimayum, Jayalaxmi, Paul, Deepjyoti, Chanda, Debadatta Dhar, Melson Singha, K., Bhattacharjee, Amitabha
• Format: Article
• Language: English
• Subjects: 16S rRNA methyl transferase; Aminoglycoside; Aminoglycosides - pharmacology; Anti-Bacterial Agents - pharmacology; Biomarker; Drug Resistance, Bacterial; Escherichia coli; Escherichia coli Proteins - drug effects; Escherichia coli Proteins - genetics; Escherichia coli Proteins - metabolism; Gene Expression; Kanamycin - pharmacology; Methyltransferases - drug effects; Methyltransferases - genetics; Methyltransferases - metabolism; Rsm
• ISSN: 1567-1348; 1567-7257
• DOI: 10.1016/j.meegid.2022.105229

We aimed to design and analyse expressional response of endogenous and exogenous 16S rRNA methyl transferase genes under sub inhibitory concentration stress of different clinically relevant aminoglycoside antibiotics in Escherichia coli to identify an endogenous marker. One hundred twenty nine aminoglycoside resistant E. coli of clinical origin were collected for detection of 16S rRNA methyl transferase genes by PCR assay and each gene type was cloned within E. coli JM107. Parent isolates were subjected to plasmid elimination by SDS treatment. Expression analysis of both acquired and endogenous 16S rRNA methyl transferase genes were performed by quantitative real-time PCR in clones and parent isolates under aminoglycoside stress (4 mg/L). Majority of the isolates were harbouring rmtC (35/129), followed by rmtB (32/129), rmtA (21/129), rmtE (13/129), armA (11/129) rmtF (9/129) and rmtH (8/129). Plasmid was successfully eliminated for all the isolates with 6% of SDS. Expression analysis indicates that kanamycin, tobramycin and netilmicin stress could increase the expression of 16S rRNA methyltransferese genes. In the presence of kanamycin stress the expression of rsmI was consistently elevated for all the wild type isolates and clones tested. Except for isolates harbouring rmtB and rmtC expression of rsmE and rsmF was increased in the presence of all aminoglycosides. For all the cured mutants it was apparently observed that expression of endogenous methyl transferases were marginally increased. Elevated expression of constitutive rsmI can be used as a potential biomarker for detection of acquired 16S rRNA methyl transferase mediated aminoglycoside resistance by using sub inhibitory concentration of kanamycin as signal molecule. •This study underscores genetic interplay between exogenous and endogenous methyl transferase genes.•The transcriptional response of different endogenous and exogenous methyl transferases under concentration gradient aminoglycoside stress.•Identifies rsmI as a reporter for acquired 16S rRNA methyl transferase mediated aminoglycoside resistance using kanamycin as signal molecule.