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The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases
SUMMARY Under low iron availability, plants induce the expression of various genes for iron uptake and translocation. The rice (Oryza sativa) ubiquitin ligases OsHRZ1 and OsHRZ2 cause overall repression of these iron‐related genes at the transcript level, but their protein‐level regulation is unclea...
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Published in: | The Plant journal : for cell and molecular biology 2022-06, Vol.110 (6), p.1731-1750 |
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container_title | The Plant journal : for cell and molecular biology |
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creator | Kobayashi, Takanori Shinkawa, Haruka Nagano, Atsushi J. Nishizawa, Naoko K. |
description | SUMMARY
Under low iron availability, plants induce the expression of various genes for iron uptake and translocation. The rice (Oryza sativa) ubiquitin ligases OsHRZ1 and OsHRZ2 cause overall repression of these iron‐related genes at the transcript level, but their protein‐level regulation is unclear. We conducted a proteome analysis to identify key regulators whose abundance was regulated by OsHRZs at the protein level. In response to iron deficiency or OsHRZ knockdown, many genes showed differential regulation between the transcript and protein levels, including the TGA‐type basic leucine zipper transcription factor OsbZIP83. We also identified two glutaredoxins, OsGRX6 and OsGRX9, as OsHRZ‐interacting proteins in yeast and plant cells. OsGRX6 also interacted with OsbZIP83. Our in vitro degradation assay suggested that OsbZIP83, OsGRX6 and OsGRX9 proteins are subjected to 26S proteasome‐ and OsHRZ‐dependent degradation. Proteome analysis and our in vitro degradation assay also suggested that OsbZIP83 protein was preferentially degraded under iron‐deficient conditions in rice roots. Transgenic rice lines overexpressing OsGRX9 and OsbZIP83 showed improved tolerance to iron deficiency. Expression of iron‐related genes was affected in the OsGRX9 and OsGRX6 knockdown lines, suggesting disturbed iron utilization and signaling. OsbZIP83 overexpression lines showed enhanced expression of OsYSL2 and OsNAS3, which are involved in internal iron translocation, in addition to OsGRX9 and genes related to phytoalexin biosynthesis and the salicylic acid pathway. The results suggest that OsbZIP83, OsGRX6 and OsGRX9 facilitate iron utilization downstream of the OsHRZ pathway.
Significance Statement
We identified new regulatory components of plant iron deficiency responses, the basic leucine zipper transcription factor OsbZIP83 and two glutaredoxins, OsGRX6 and OsGRX9, which facilitate rice (Oryza sativa) iron utilization. OsbZIP83, OsGRX6 and OsGRX9 interact with OsHRZ ubiquitin ligases and are subjected to OsHRZ‐dependent degradation via the 26S proteasome pathway, linking the protein‐level and transcript‐level regulation of iron deficiency responses downstream of OsHRZs. |
doi_str_mv | 10.1111/tpj.15767 |
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Under low iron availability, plants induce the expression of various genes for iron uptake and translocation. The rice (Oryza sativa) ubiquitin ligases OsHRZ1 and OsHRZ2 cause overall repression of these iron‐related genes at the transcript level, but their protein‐level regulation is unclear. We conducted a proteome analysis to identify key regulators whose abundance was regulated by OsHRZs at the protein level. In response to iron deficiency or OsHRZ knockdown, many genes showed differential regulation between the transcript and protein levels, including the TGA‐type basic leucine zipper transcription factor OsbZIP83. We also identified two glutaredoxins, OsGRX6 and OsGRX9, as OsHRZ‐interacting proteins in yeast and plant cells. OsGRX6 also interacted with OsbZIP83. Our in vitro degradation assay suggested that OsbZIP83, OsGRX6 and OsGRX9 proteins are subjected to 26S proteasome‐ and OsHRZ‐dependent degradation. Proteome analysis and our in vitro degradation assay also suggested that OsbZIP83 protein was preferentially degraded under iron‐deficient conditions in rice roots. Transgenic rice lines overexpressing OsGRX9 and OsbZIP83 showed improved tolerance to iron deficiency. Expression of iron‐related genes was affected in the OsGRX9 and OsGRX6 knockdown lines, suggesting disturbed iron utilization and signaling. OsbZIP83 overexpression lines showed enhanced expression of OsYSL2 and OsNAS3, which are involved in internal iron translocation, in addition to OsGRX9 and genes related to phytoalexin biosynthesis and the salicylic acid pathway. The results suggest that OsbZIP83, OsGRX6 and OsGRX9 facilitate iron utilization downstream of the OsHRZ pathway.
Significance Statement
We identified new regulatory components of plant iron deficiency responses, the basic leucine zipper transcription factor OsbZIP83 and two glutaredoxins, OsGRX6 and OsGRX9, which facilitate rice (Oryza sativa) iron utilization. OsbZIP83, OsGRX6 and OsGRX9 interact with OsHRZ ubiquitin ligases and are subjected to OsHRZ‐dependent degradation via the 26S proteasome pathway, linking the protein‐level and transcript‐level regulation of iron deficiency responses downstream of OsHRZs.</description><identifier>ISSN: 0960-7412</identifier><identifier>EISSN: 1365-313X</identifier><identifier>DOI: 10.1111/tpj.15767</identifier><identifier>PMID: 35411594</identifier><language>eng</language><publisher>England: Blackwell Publishing Ltd</publisher><subject>basic leucine zipper transcription factor ; Biosynthesis ; Degradation ; Downstream effects ; Gene expression ; Gene regulation ; Genes ; glutaredoxin ; Iron ; Iron deficiency ; iron deficiency response ; iron sensing ; Leucine ; Leucine zipper proteins ; Nutrient deficiency ; Oryza sativa ; Plant cells ; Proteasome 26S ; Proteins ; protein‐level regulation ; Proteomes ; Rice ; rice (Oryza sativa) ; Salicylic acid ; Transcription factors ; transcriptional regulation ; Translocation ; Ubiquitin ; ubiquitin ligase ; Utilization ; Yeasts</subject><ispartof>The Plant journal : for cell and molecular biology, 2022-06, Vol.110 (6), p.1731-1750</ispartof><rights>2022 Society for Experimental Biology and John Wiley & Sons Ltd.</rights><rights>Copyright © 2022 John Wiley & Sons Ltd and the Society for Experimental Biology</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4947-3544786f68fcfd35de288f6b70ec144548baa74e360eb6f49ec6b1ecfd27583</citedby><cites>FETCH-LOGICAL-c4947-3544786f68fcfd35de288f6b70ec144548baa74e360eb6f49ec6b1ecfd27583</cites><orcidid>0000-0001-7118-6955</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35411594$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kobayashi, Takanori</creatorcontrib><creatorcontrib>Shinkawa, Haruka</creatorcontrib><creatorcontrib>Nagano, Atsushi J.</creatorcontrib><creatorcontrib>Nishizawa, Naoko K.</creatorcontrib><title>The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases</title><title>The Plant journal : for cell and molecular biology</title><addtitle>Plant J</addtitle><description>SUMMARY
Under low iron availability, plants induce the expression of various genes for iron uptake and translocation. The rice (Oryza sativa) ubiquitin ligases OsHRZ1 and OsHRZ2 cause overall repression of these iron‐related genes at the transcript level, but their protein‐level regulation is unclear. We conducted a proteome analysis to identify key regulators whose abundance was regulated by OsHRZs at the protein level. In response to iron deficiency or OsHRZ knockdown, many genes showed differential regulation between the transcript and protein levels, including the TGA‐type basic leucine zipper transcription factor OsbZIP83. We also identified two glutaredoxins, OsGRX6 and OsGRX9, as OsHRZ‐interacting proteins in yeast and plant cells. OsGRX6 also interacted with OsbZIP83. Our in vitro degradation assay suggested that OsbZIP83, OsGRX6 and OsGRX9 proteins are subjected to 26S proteasome‐ and OsHRZ‐dependent degradation. Proteome analysis and our in vitro degradation assay also suggested that OsbZIP83 protein was preferentially degraded under iron‐deficient conditions in rice roots. Transgenic rice lines overexpressing OsGRX9 and OsbZIP83 showed improved tolerance to iron deficiency. Expression of iron‐related genes was affected in the OsGRX9 and OsGRX6 knockdown lines, suggesting disturbed iron utilization and signaling. OsbZIP83 overexpression lines showed enhanced expression of OsYSL2 and OsNAS3, which are involved in internal iron translocation, in addition to OsGRX9 and genes related to phytoalexin biosynthesis and the salicylic acid pathway. The results suggest that OsbZIP83, OsGRX6 and OsGRX9 facilitate iron utilization downstream of the OsHRZ pathway.
Significance Statement
We identified new regulatory components of plant iron deficiency responses, the basic leucine zipper transcription factor OsbZIP83 and two glutaredoxins, OsGRX6 and OsGRX9, which facilitate rice (Oryza sativa) iron utilization. OsbZIP83, OsGRX6 and OsGRX9 interact with OsHRZ ubiquitin ligases and are subjected to OsHRZ‐dependent degradation via the 26S proteasome pathway, linking the protein‐level and transcript‐level regulation of iron deficiency responses downstream of OsHRZs.</description><subject>basic leucine zipper transcription factor</subject><subject>Biosynthesis</subject><subject>Degradation</subject><subject>Downstream effects</subject><subject>Gene expression</subject><subject>Gene regulation</subject><subject>Genes</subject><subject>glutaredoxin</subject><subject>Iron</subject><subject>Iron deficiency</subject><subject>iron deficiency response</subject><subject>iron sensing</subject><subject>Leucine</subject><subject>Leucine zipper proteins</subject><subject>Nutrient deficiency</subject><subject>Oryza sativa</subject><subject>Plant cells</subject><subject>Proteasome 26S</subject><subject>Proteins</subject><subject>protein‐level regulation</subject><subject>Proteomes</subject><subject>Rice</subject><subject>rice (Oryza sativa)</subject><subject>Salicylic acid</subject><subject>Transcription factors</subject><subject>transcriptional regulation</subject><subject>Translocation</subject><subject>Ubiquitin</subject><subject>ubiquitin ligase</subject><subject>Utilization</subject><subject>Yeasts</subject><issn>0960-7412</issn><issn>1365-313X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><recordid>eNp1kctO3DAUhi3UCqaUBS9QWeqmXQTs-JYsK9QCFRKIzgKxiRznhHqUsYMvauGZ-pD1zNAuKtUbWz7f-Y6tH6FjSk5oWadpXp1QoaTaQwvKpKgYZXev0IK0klSK0_oAvYlxRQhVTPJ9dMAEp1S0fIF-Lb8D7nW0Bk-QjXWAn-08Q8ApaBdNsHOy3uFRm-QDvo79_eVNw7B2A06l9WHKSQcY_E_rYimf397JbXF7bDd9drJJJ8DBGsA2FFlO5e5Zb8XZDZthRWW8S8FP2I-l-eL2HufePmabrMOTfdAR4lv0etRThKOX_RB9-_J5eXZRXV2fX559uqoMb7mqyu-4auQom9GMAxMD1E0zyl4RMJRzwZtea8WBSQK9HHkLRvYUClsr0bBD9GFnnYN_zBBTt7bRwDRpBz7Hrpa8FS2tpSzo-3_Qlc_BlbcVqiGiZpyIQn3cUSb4GAOM3RzsWoenjpJuE2BXAuy2ARb23Ysx92sY_pJ_EivA6Q74YSd4-r-pW9583Sl_A-mbp0M</recordid><startdate>202206</startdate><enddate>202206</enddate><creator>Kobayashi, Takanori</creator><creator>Shinkawa, Haruka</creator><creator>Nagano, Atsushi J.</creator><creator>Nishizawa, Naoko K.</creator><general>Blackwell Publishing Ltd</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7QP</scope><scope>7QR</scope><scope>7TM</scope><scope>8FD</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-7118-6955</orcidid></search><sort><creationdate>202206</creationdate><title>The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases</title><author>Kobayashi, Takanori ; Shinkawa, Haruka ; Nagano, Atsushi J. ; Nishizawa, Naoko K.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4947-3544786f68fcfd35de288f6b70ec144548baa74e360eb6f49ec6b1ecfd27583</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>basic leucine zipper transcription factor</topic><topic>Biosynthesis</topic><topic>Degradation</topic><topic>Downstream effects</topic><topic>Gene expression</topic><topic>Gene regulation</topic><topic>Genes</topic><topic>glutaredoxin</topic><topic>Iron</topic><topic>Iron deficiency</topic><topic>iron deficiency response</topic><topic>iron sensing</topic><topic>Leucine</topic><topic>Leucine zipper proteins</topic><topic>Nutrient deficiency</topic><topic>Oryza sativa</topic><topic>Plant cells</topic><topic>Proteasome 26S</topic><topic>Proteins</topic><topic>protein‐level regulation</topic><topic>Proteomes</topic><topic>Rice</topic><topic>rice (Oryza sativa)</topic><topic>Salicylic acid</topic><topic>Transcription factors</topic><topic>transcriptional regulation</topic><topic>Translocation</topic><topic>Ubiquitin</topic><topic>ubiquitin ligase</topic><topic>Utilization</topic><topic>Yeasts</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kobayashi, Takanori</creatorcontrib><creatorcontrib>Shinkawa, Haruka</creatorcontrib><creatorcontrib>Nagano, Atsushi J.</creatorcontrib><creatorcontrib>Nishizawa, Naoko K.</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>The Plant journal : for cell and molecular biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kobayashi, Takanori</au><au>Shinkawa, Haruka</au><au>Nagano, Atsushi J.</au><au>Nishizawa, Naoko K.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases</atitle><jtitle>The Plant journal : for cell and molecular biology</jtitle><addtitle>Plant J</addtitle><date>2022-06</date><risdate>2022</risdate><volume>110</volume><issue>6</issue><spage>1731</spage><epage>1750</epage><pages>1731-1750</pages><issn>0960-7412</issn><eissn>1365-313X</eissn><abstract>SUMMARY
Under low iron availability, plants induce the expression of various genes for iron uptake and translocation. The rice (Oryza sativa) ubiquitin ligases OsHRZ1 and OsHRZ2 cause overall repression of these iron‐related genes at the transcript level, but their protein‐level regulation is unclear. We conducted a proteome analysis to identify key regulators whose abundance was regulated by OsHRZs at the protein level. In response to iron deficiency or OsHRZ knockdown, many genes showed differential regulation between the transcript and protein levels, including the TGA‐type basic leucine zipper transcription factor OsbZIP83. We also identified two glutaredoxins, OsGRX6 and OsGRX9, as OsHRZ‐interacting proteins in yeast and plant cells. OsGRX6 also interacted with OsbZIP83. Our in vitro degradation assay suggested that OsbZIP83, OsGRX6 and OsGRX9 proteins are subjected to 26S proteasome‐ and OsHRZ‐dependent degradation. Proteome analysis and our in vitro degradation assay also suggested that OsbZIP83 protein was preferentially degraded under iron‐deficient conditions in rice roots. Transgenic rice lines overexpressing OsGRX9 and OsbZIP83 showed improved tolerance to iron deficiency. Expression of iron‐related genes was affected in the OsGRX9 and OsGRX6 knockdown lines, suggesting disturbed iron utilization and signaling. OsbZIP83 overexpression lines showed enhanced expression of OsYSL2 and OsNAS3, which are involved in internal iron translocation, in addition to OsGRX9 and genes related to phytoalexin biosynthesis and the salicylic acid pathway. The results suggest that OsbZIP83, OsGRX6 and OsGRX9 facilitate iron utilization downstream of the OsHRZ pathway.
Significance Statement
We identified new regulatory components of plant iron deficiency responses, the basic leucine zipper transcription factor OsbZIP83 and two glutaredoxins, OsGRX6 and OsGRX9, which facilitate rice (Oryza sativa) iron utilization. OsbZIP83, OsGRX6 and OsGRX9 interact with OsHRZ ubiquitin ligases and are subjected to OsHRZ‐dependent degradation via the 26S proteasome pathway, linking the protein‐level and transcript‐level regulation of iron deficiency responses downstream of OsHRZs.</abstract><cop>England</cop><pub>Blackwell Publishing Ltd</pub><pmid>35411594</pmid><doi>10.1111/tpj.15767</doi><tpages>1750</tpages><orcidid>https://orcid.org/0000-0001-7118-6955</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | basic leucine zipper transcription factor Biosynthesis Degradation Downstream effects Gene expression Gene regulation Genes glutaredoxin Iron Iron deficiency iron deficiency response iron sensing Leucine Leucine zipper proteins Nutrient deficiency Oryza sativa Plant cells Proteasome 26S Proteins protein‐level regulation Proteomes Rice rice (Oryza sativa) Salicylic acid Transcription factors transcriptional regulation Translocation Ubiquitin ubiquitin ligase Utilization Yeasts |
title | The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases |
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