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Oil plant genomes: current state of the science
Abstract Vegetable oils are an indispensable nutritional component of the human diet as well as important raw materials for a variety of industrial applications such as pharmaceuticals, cosmetics, oleochemicals, and biofuels. Oil plant genomes are highly diverse, and their genetic variation leads to...
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| Published in: | Journal of experimental botany 2022-05, Vol.73 (9), p.2859-2874 |
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| Main Authors: | , , , , , , , |
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| Language: | English |
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| cites | cdi_FETCH-LOGICAL-c2722-52045e02f66d31be744496f893c96569d29db18e8723eaa35ec5d097ce45b10f3 |
| container_end_page | 2874 |
| container_issue | 9 |
| container_start_page | 2859 |
| container_title | Journal of experimental botany |
| container_volume | 73 |
| creator | Song, Jia-Ming Zhang, Yuting Zhou, Zhi-Wei Lu, Shaoping Ma, Wei Lu, Chaofu Chen, Ling-Ling Guo, Liang |
| description | Abstract
Vegetable oils are an indispensable nutritional component of the human diet as well as important raw materials for a variety of industrial applications such as pharmaceuticals, cosmetics, oleochemicals, and biofuels. Oil plant genomes are highly diverse, and their genetic variation leads to a diversity in oil biosynthesis and accumulation along with agronomic traits. This review discusses plant oil biosynthetic pathways, current state of genome assembly, polyploidy and asymmetric evolution of genomes of oil plants and their wild relatives, and research progress of pan-genomics in oil plants. The availability of complete high-resolution genomes and pan-genomes has enabled the identification of structural variations in the genomes that are associated with the diversity of agronomic and environment fitness traits. These and future genomes also provide powerful tools to understand crop evolution and to harvest the rich natural variations to improve oil crops for enhanced productivity, oil quality, and adaptability to changing environments.
This review discusses current knowledge of genome assembly, characteristics of oil plant genomes, and research progress of pan-genomics in oil plants. |
| doi_str_mv | 10.1093/jxb/erab472 |
| format | article |
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Vegetable oils are an indispensable nutritional component of the human diet as well as important raw materials for a variety of industrial applications such as pharmaceuticals, cosmetics, oleochemicals, and biofuels. Oil plant genomes are highly diverse, and their genetic variation leads to a diversity in oil biosynthesis and accumulation along with agronomic traits. This review discusses plant oil biosynthetic pathways, current state of genome assembly, polyploidy and asymmetric evolution of genomes of oil plants and their wild relatives, and research progress of pan-genomics in oil plants. The availability of complete high-resolution genomes and pan-genomes has enabled the identification of structural variations in the genomes that are associated with the diversity of agronomic and environment fitness traits. These and future genomes also provide powerful tools to understand crop evolution and to harvest the rich natural variations to improve oil crops for enhanced productivity, oil quality, and adaptability to changing environments.
This review discusses current knowledge of genome assembly, characteristics of oil plant genomes, and research progress of pan-genomics in oil plants.</description><identifier>ISSN: 0022-0957</identifier><identifier>EISSN: 1460-2431</identifier><identifier>DOI: 10.1093/jxb/erab472</identifier><identifier>PMID: 35560205</identifier><language>eng</language><publisher>UK: Oxford University Press</publisher><subject>Crops, Agricultural - genetics ; Genome, Plant ; Genomics ; Polyploidy</subject><ispartof>Journal of experimental botany, 2022-05, Vol.73 (9), p.2859-2874</ispartof><rights>The Author(s) 2021. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissions@oup.com 2021</rights><rights>The Author(s) 2021. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissions@oup.com.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c2722-52045e02f66d31be744496f893c96569d29db18e8723eaa35ec5d097ce45b10f3</citedby><cites>FETCH-LOGICAL-c2722-52045e02f66d31be744496f893c96569d29db18e8723eaa35ec5d097ce45b10f3</cites><orcidid>0000-0001-7191-5062</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35560205$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Kim, Hyun Uk</contributor><creatorcontrib>Song, Jia-Ming</creatorcontrib><creatorcontrib>Zhang, Yuting</creatorcontrib><creatorcontrib>Zhou, Zhi-Wei</creatorcontrib><creatorcontrib>Lu, Shaoping</creatorcontrib><creatorcontrib>Ma, Wei</creatorcontrib><creatorcontrib>Lu, Chaofu</creatorcontrib><creatorcontrib>Chen, Ling-Ling</creatorcontrib><creatorcontrib>Guo, Liang</creatorcontrib><title>Oil plant genomes: current state of the science</title><title>Journal of experimental botany</title><addtitle>J Exp Bot</addtitle><description>Abstract
Vegetable oils are an indispensable nutritional component of the human diet as well as important raw materials for a variety of industrial applications such as pharmaceuticals, cosmetics, oleochemicals, and biofuels. Oil plant genomes are highly diverse, and their genetic variation leads to a diversity in oil biosynthesis and accumulation along with agronomic traits. This review discusses plant oil biosynthetic pathways, current state of genome assembly, polyploidy and asymmetric evolution of genomes of oil plants and their wild relatives, and research progress of pan-genomics in oil plants. The availability of complete high-resolution genomes and pan-genomes has enabled the identification of structural variations in the genomes that are associated with the diversity of agronomic and environment fitness traits. These and future genomes also provide powerful tools to understand crop evolution and to harvest the rich natural variations to improve oil crops for enhanced productivity, oil quality, and adaptability to changing environments.
This review discusses current knowledge of genome assembly, characteristics of oil plant genomes, and research progress of pan-genomics in oil plants.</description><subject>Crops, Agricultural - genetics</subject><subject>Genome, Plant</subject><subject>Genomics</subject><subject>Polyploidy</subject><issn>0022-0957</issn><issn>1460-2431</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><recordid>eNp9kE1Lw0AQQBdRbK2evEtOIkjM7HfWmxS_oNCLnpdkM9GUpIm7Cei_d6XVo6eB4fFmeIScU7ihYHi2-Swz9EUpNDsgcyoUpExwekjmAIylYKSekZMQNgAgQcpjMuNSKmAg5yRbN20ytMV2TN5w23cYbhM3eY9xEcZixKSvk_Edk-Aa3Do8JUd10QY8288FeX24f1k-pav14_PybpU6puNRyUBIBFYrVXFaohZCGFXnhjujpDIVM1VJc8w141gUXKKTFRjtUMiSQs0X5GrnHXz_MWEYbdcEh238FPspWKaUyIELzSN6vUOd70PwWNvBN13hvywF-1PIxkJ2XyjSF3vxVHZY_bG_SSJwuQP6afjX9A16DG0s</recordid><startdate>20220513</startdate><enddate>20220513</enddate><creator>Song, Jia-Ming</creator><creator>Zhang, Yuting</creator><creator>Zhou, Zhi-Wei</creator><creator>Lu, Shaoping</creator><creator>Ma, Wei</creator><creator>Lu, Chaofu</creator><creator>Chen, Ling-Ling</creator><creator>Guo, Liang</creator><general>Oxford University Press</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-7191-5062</orcidid></search><sort><creationdate>20220513</creationdate><title>Oil plant genomes: current state of the science</title><author>Song, Jia-Ming ; Zhang, Yuting ; Zhou, Zhi-Wei ; Lu, Shaoping ; Ma, Wei ; Lu, Chaofu ; Chen, Ling-Ling ; Guo, Liang</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c2722-52045e02f66d31be744496f893c96569d29db18e8723eaa35ec5d097ce45b10f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Crops, Agricultural - genetics</topic><topic>Genome, Plant</topic><topic>Genomics</topic><topic>Polyploidy</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Song, Jia-Ming</creatorcontrib><creatorcontrib>Zhang, Yuting</creatorcontrib><creatorcontrib>Zhou, Zhi-Wei</creatorcontrib><creatorcontrib>Lu, Shaoping</creatorcontrib><creatorcontrib>Ma, Wei</creatorcontrib><creatorcontrib>Lu, Chaofu</creatorcontrib><creatorcontrib>Chen, Ling-Ling</creatorcontrib><creatorcontrib>Guo, Liang</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of experimental botany</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Song, Jia-Ming</au><au>Zhang, Yuting</au><au>Zhou, Zhi-Wei</au><au>Lu, Shaoping</au><au>Ma, Wei</au><au>Lu, Chaofu</au><au>Chen, Ling-Ling</au><au>Guo, Liang</au><au>Kim, Hyun Uk</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Oil plant genomes: current state of the science</atitle><jtitle>Journal of experimental botany</jtitle><addtitle>J Exp Bot</addtitle><date>2022-05-13</date><risdate>2022</risdate><volume>73</volume><issue>9</issue><spage>2859</spage><epage>2874</epage><pages>2859-2874</pages><issn>0022-0957</issn><eissn>1460-2431</eissn><abstract>Abstract
Vegetable oils are an indispensable nutritional component of the human diet as well as important raw materials for a variety of industrial applications such as pharmaceuticals, cosmetics, oleochemicals, and biofuels. Oil plant genomes are highly diverse, and their genetic variation leads to a diversity in oil biosynthesis and accumulation along with agronomic traits. This review discusses plant oil biosynthetic pathways, current state of genome assembly, polyploidy and asymmetric evolution of genomes of oil plants and their wild relatives, and research progress of pan-genomics in oil plants. The availability of complete high-resolution genomes and pan-genomes has enabled the identification of structural variations in the genomes that are associated with the diversity of agronomic and environment fitness traits. These and future genomes also provide powerful tools to understand crop evolution and to harvest the rich natural variations to improve oil crops for enhanced productivity, oil quality, and adaptability to changing environments.
This review discusses current knowledge of genome assembly, characteristics of oil plant genomes, and research progress of pan-genomics in oil plants.</abstract><cop>UK</cop><pub>Oxford University Press</pub><pmid>35560205</pmid><doi>10.1093/jxb/erab472</doi><tpages>16</tpages><orcidid>https://orcid.org/0000-0001-7191-5062</orcidid><oa>free_for_read</oa></addata></record> |
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| identifier | ISSN: 0022-0957 |
| ispartof | Journal of experimental botany, 2022-05, Vol.73 (9), p.2859-2874 |
| issn | 0022-0957 1460-2431 |
| language | eng |
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| source | Oxford Journals Online |
| subjects | Crops, Agricultural - genetics Genome, Plant Genomics Polyploidy |
| title | Oil plant genomes: current state of the science |
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