Genome-wide analysis of PTR transporters in Candida species and their functional characterization in Candida auris

• Published in: Applied microbiology and biotechnology 2022-06, Vol.106 (11), p.4223-4235
• Main Authors: Khatoon, Rosy, Sharma, Suman, Prasad, Rajendra, Lynn, Andrew M., Prakash, Amresh, Banerjee, Atanu
• Format: Article
• Language: English
• Subjects: Applied Microbial and Cell Physiology; Biomedical and Life Sciences; Biotechnology; Candida; Candida auris; Drug resistance; Fungal infections; Fungicides; Gene deletion; Genes; Genetic aspects; Genome-wide association studies; Genomes; Glucosamine; Glucosamine-6-phosphate synthase; Life Sciences; Microbial Genetics and Genomics; Microbiology; Nikkomycin; Peptides; Protonmotive force; Protons; Species; Structure-function relationships
• ISSN: 0175-7598; 1432-0614
• DOI: 10.1007/s00253-022-11998-9

The peptide transport (PTR) or proton-dependent oligopeptide transporter (POT) family exploits the inwardly directed proton motive force to facilitate the cellular uptake of di/tripeptides. Interestingly, some representatives are also shown to import peptide-based antifungals in certain Candida species. Thus, the identification and characterization of PTR transporters serve as an essential first step for their potential usage as antifungal peptide uptake systems. Herein, we present a genome-wide inventory of the PTR transporters in five prominent Candida species. Our study identifies 2 PTR transporters each in C. albicans and C. dubliniensis , 1 in C. glabrata , 4 in C. parapsilosis , and 3 in C. auris . Notably, despite all representatives retaining the conserved features seen in the PTR family, there exist two distinct classes of PTR transporters that differ in terms of their sequence identities and lengths of certain extracellular and intracellular segments. Further, we also evaluated the contribution of each PTR protein of the newly emerged multi-drug-resistant C. auris in di/tripeptide uptake. Notably, deletion of two PTR genes BNJ08_003830 and BNJ08_005124 led to a marked reduction in the transport capabilities of several tested di/tripeptides. However, all three genes could complement the role of native PTR2 gene of Saccharomyces cerevisiae , albeit to varied levels. Besides, BNJ08_005124 deletion also resulted in increased resistance toward the peptide-nucleoside drug Nikkomycin Z as well as the glucosamine-6-phosphate synthase inhibitor, L-norvalyl-N3-(4-methoxyfumaroyl)-L-2,3-diaminopropionoic acid (Nva-FMDP), pointing toward its predominant role in their uptake mechanism. Altogether, the study provides an important template for future structure–function investigations of PTR transporters in Candida species. Key points • Candida genome encodes for two distinct classes of PTR transporters. • Candida auris encodes for 3 PTR transporters with different specificities. • BNJ08_005124 in C. auris is involved in the uptake of Nikkomycin Z and Nva-FMDP.