Identification of key pathways and genes in the progression of silicosis based on WGCNA

• Published in: Inhalation toxicology 2022-10, Vol.34 (11-12), p.304-318
• Main Authors: Lv, Jiaqi, Xiao, Jingwei, Jia, Qiang, Meng, Xiangjing, Yang, Zhifeng, Pu, Shuangshuang, Li, Ming, Yu, Tao, Zhang, Yi, Wang, Haihua, Liu, Li, Li, Zhongsheng, Chen, Xiao, Yang, Haitao, Li, Yulu, Qiao, Mengyun, Duan, Airu, Shao, Hua, Li, Bin
• Format: Article
• Language: English
• Subjects: Hippo signaling pathway; Pulmonary fibrosis; RNA-seq; Silicosis; Weighted gene co-expression network analysis (WGCNA)
• ISSN: 0895-8378; 1091-7691
• DOI: 10.1080/08958378.2022.2102700

Silicosis, induced by inhaling silica particles in workplaces, is one of the most common occupational diseases. The prognosis of silicosis and its consequent fibrosis is extremely poor due to limited treatment modalities and lack of understanding of the disease mechanisms. In this study, a Wistar rat model for silicosis fibrosis was established by intratracheal instillation of silica (0, 50, 100 and 200 mg/mL, 1 mL) with the evidence of Hematoxylin and Eosin (HE) and Masson staining and the expressions of inflammatory and fibrotic proteins of rats' lung tissues. RNA of lung tissues of rats exposed to 200 mg/mL silica particles and normal saline for 14 d and 28 d was extracted and sequenced to detect differentially expressed genes (DEGs) and to identify silicosis fibrosis-associated modules and hub genes by Weighted gene co-expression network analysis (WGCNA). Predictions of gene functions and signaling pathways were conducted using Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) databases. In this study, it has been demonstrated the promising role of the Hippo signaling pathway in silicosis fibrosis, which will be conducive to elucidating the specific mechanism of pulmonary fibrosis induced by silica and to determining molecular initiating event (MIE) and adverse outcome pathway (AOP) of silicosis fibrosis.