Models of natural organic matter and interactions with organic contaminants

• Published in: Organic geochemistry 1999-01, Vol.30 (8), p.911-927
• Main Authors: Kubicki, J.D, Apitz, S.E
• Format: Article
• Language: English
• Subjects: Earth sciences; Earth, ocean, space; Engineering and environment geology. Geothermics; Exact sciences and technology; Fulvic acids; Humic acids; Hydrocarbons; Lignin; Molecular modeling; PM3 calculations; Pollution, environment geology; Sedimentary rocks; Soil contaminants; Soils; Soot; Surficial geology
• ISSN: 0146-6380; 1873-5290
• DOI: 10.1016/S0146-6380(99)00075-3

Adsorption of organic contaminants onto soils, sediments and other particulates has the potential to be a major controlling factor in their bioavailability, fate and behavior in the environment. Models for estimating the amount and stability of sorbed organic contaminants based on the fraction of organic carbon in a soil or sediment can oversimplify the process of sorption in the environment. In order to help understand sorption of organic contaminants in soils and sediments, we modeled various components of natural organic matter (NOM) that are possible substrates for sorption. These substrates include soot particles, lignin, humic and fulvic acids. The molecular scale interactions of selected aromatic hydrocarbons with different substrates were also simulated. Results of the simulations include the 3-D structures of the NOM components, changes in structure with protonation state and solvation and the sorption energy between PAH and substrate. This last parameter is an indicator of the amount of contaminant that will sorb and the energy required to free the contaminant from the substrate. Although the simulation results presented in this paper represent a first-order examination of NOM and contaminant interactions, the findings highlight a number of essential features that should be included in future molecular models of NOM and contaminant sorption.