Elevated expression of ISY1, APOA-1, SYNE1, MTG1, and MMP10 at HCC initiation: HCC specific protein network involving interactions of key regulators of lipid metabolism, EGFR signaling, MAPK, and splicing pathways

• Published in: Protoplasma 2023-03, Vol.260 (2), p.651-662
• Main Authors: Shaglouf, Laila H. Faraj, Ranjpour, Maryam, Wajid, Saima, Tandon, Rakesh, Vasudevan, Karisangal Ramaswamy, Jain, Swatantra Kumar
• Format: Article
• Language: English
• Subjects: Animals; Apolipoprotein A-I - adverse effects; Apolipoprotein A-I - genetics; Apolipoprotein A-I - metabolism; Biomedical and Life Sciences; Carcinoma, Hepatocellular - genetics; Carcinoma, Hepatocellular - pathology; Cell Biology; ErbB Receptors - adverse effects; ErbB Receptors - genetics; ErbB Receptors - metabolism; Gene expression; Gene Expression Regulation, Neoplastic; Hepatocellular carcinoma; Life Sciences; Lipid Metabolism; Liver cancer; Liver Neoplasms - genetics; Liver Neoplasms - pathology; Male; MAP kinase; Matrix Metalloproteinase 10 - genetics; Molecular modelling; Nerve Tissue Proteins - genetics; Nuclear Proteins - genetics; Nuclear Proteins - metabolism; Original Article; Plant Sciences; Proteins; Proteome - metabolism; Proteomes; Rats; Rats, Wistar; RNA, Messenger - genetics; Signal transduction; Splicing factors; Stromelysin 2; Tandem Mass Spectrometry; Transcriptomes; Tumorigenesis; Zoology
• ISSN: 0033-183X; 1615-6102
• DOI: 10.1007/s00709-022-01796-5

Identification of molecular regulators of hepatocellular carcinoma (HCC) initiation and progression is not well understood. We chemically induced HCC in male Wistar rats by administration of diethyl nitrosamine (DEN) and 2-acetylaminofluorene (2-AFF). Using 2D-electrophoresis and MALDI-TOF–MS/MS analyses, we characterized differentially expressed proteins in liver tissues at early stage of HCC progression. Using RT-PCR analysis, we quantified the mRNA expression of the characterized proteins and validated the transcript expression with tumor tissues of clinically confirmed HCC patients. Using bioinformatic tools, we analyzed a network among the introduced proteins that identified their interacting partners and analyzed the molecular mechanisms associated with signaling pathways during HCC progression. We characterized a protein, namely, pre-mRNA splicing factor 1 homolog (ISY1), which is upregulated at both transcriptome and proteome levels at HCC initiation, progression, and tumor stages. We analyzed the interacting partners of ISY1, namely, APOA-1, SYNE1, MMP10, and MTG1. Real-time PCR analysis confirmed elevated expression of APOA-1 mRNA at HCC initiation, progression, and tumor stages in animals undergoing tumorigenesis. The mRNA expression of the interacting partners was validated with tumor tissues of clinically confirmed liver cancer patients; the analysis revealed significant elevation in expression of transcripts. The transcriptome and proteome analyses complement each other and dysregulation in mRNA and protein expression of these regulators may play critical role in HCC initiation and progression.