Construction of tomato plants with suppressed endo-β-N-acetylglucosaminidase activity using CRISPR-Cas9 mediated genome editing

• Published in: Plant physiology and biochemistry 2022-11, Vol.190, p.203-211
• Main Authors: Okamoto, Naoko, Maeda, Megumi, Yamamoto, Chiharu, Kodama, Reo, Sugimoto, Koichi, Shinozaki, Yoshihito, Ezura, Hiroshi, Kimura, Yoshinobu
• Format: Article
• Language: English
• Subjects: CRISPR-Cas systems; DNA; endo-β-N-Acetylglucosaminidase; Free N-Glycans; fruits; genes; Micro-tom; Peptide: N-Glycanase; plant physiology; tomatoes
• ISSN: 0981-9428; 1873-2690
• DOI: 10.1016/j.plaphy.2022.08.009

High mannose-type free N-glycans with a single N-acetyl-D-glucosamine (GlcNAc) residue at the reducing end (GN1-HMT-FNGs) are produced by cytosolic endo-β-N-acetylglucosaminidase (EC:3.2.1.96) (ENGase) and are ubiquitous in differentiating and growing plant cells. To elucidate the physiological functions of HMT-FNGs in plants, we identified the ENGase gene in tomato (Solyc06g050930) and detected ENGase activity and increased production of GN1-HMT-FNGs during tomato fruit maturation. However, the precise role of GN1-HMT-FNGs in fruit maturation remains unclear. In this study, we established tomato ENGase mutants with suppressed ENGase activity via CRISPR/Cas9 genome editing technology. DNA sequencing of the Δeng mutants (T0 and T1 generations) revealed that they had the same mutations in the genomic DNA around the target sequences. Three null CRISPR/Cas9 segregant plants of the T1 generation (Δeng1-2, −22, and −26) were used to measure ENGase activity and analyze the structural features of HMT-FNGs in the leaves. The Δeng mutants did not exhibit ENGase activity and produced GN2-HMT-FNGs bearing tow GlcNAc residues at the reducing end side instead of GN1-HMT-FNGs. The Δeng mutants lack the N-terminal region of ENGase, indicating that the N-terminal region is important for full ENGase activity. The fruits of Δeng mutants (T2 generation) also showed loss of ENGase activity and similar structural features of HMT-FNGs of the T1 generation. However, there was no significant difference in fruit maturation between the T2 generation of the Δeng mutants and the wild type. The Δeng mutants rich in GN2-HMT-FNGs could be offered as a new tomato that is different from wild type containing GN1-HMT-FNGs. •CRISPR/Cas9 was used to construct tomato ENGase mutants.•N-terminal region of ENGase is necessary for full activity of ENGase.•ENGase mutants produced GN2-HMT-FNGs but not GN1-HMT-FNGs.•ENGase mutants showed no distinct phenotypic changes compared to the wild type.