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First detection and complete genome sequence of a new tobamovirus naturally infecting Hibiscus rosa-sinensis in Hawaii
High-throughput sequencing was used to analyze Hibiscus rosa-sinensis (family Malvaceae) plants with virus-like symptoms in Hawaii. Bioinformatic and phylogenetic analysis revealed the presence of two tobamoviruses, hibiscus latent Fort Pierce virus (HLFPV) and a new tobamovirus with the proposed na...
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| Published in: | Archives of virology 2023-02, Vol.168 (2), p.40-40, Article 40 |
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| Main Authors: | , , , , , , , , |
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| container_end_page | 40 |
| container_issue | 2 |
| container_start_page | 40 |
| container_title | Archives of virology |
| container_volume | 168 |
| creator | Wang, Xupeng Larrea-Sarmiento, Adriana Olmedo-Velarde, Alejandro Kong, Alexandra Borth, Wayne Suzuki, Jon Y. Wall, Marisa M. Melzer, Michael Hu, John |
| description | High-throughput sequencing was used to analyze
Hibiscus rosa-sinensis
(family Malvaceae) plants with virus-like symptoms in Hawaii. Bioinformatic and phylogenetic analysis revealed the presence of two tobamoviruses, hibiscus latent Fort Pierce virus (HLFPV) and a new tobamovirus with the proposed name "hibiscus latent Hawaii virus" (HLHV). This is the first report of the complete sequence, genome organization, and phylogenetic characterization of a tobamovirus infecting hibiscus in Hawaii. RT-PCR with virus-specific primers and Sanger sequencing further confirmed the presence of these viruses. Inoculation experiments showed that HLFPV could be mechanically transmitted to
Nicotiana benthamiana
and
N. tabacum
, while HLHV could only be mechanically transmitted to
N. benthamiana. |
| doi_str_mv | 10.1007/s00705-022-05634-0 |
| format | article |
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Hibiscus rosa-sinensis
(family Malvaceae) plants with virus-like symptoms in Hawaii. Bioinformatic and phylogenetic analysis revealed the presence of two tobamoviruses, hibiscus latent Fort Pierce virus (HLFPV) and a new tobamovirus with the proposed name "hibiscus latent Hawaii virus" (HLHV). This is the first report of the complete sequence, genome organization, and phylogenetic characterization of a tobamovirus infecting hibiscus in Hawaii. RT-PCR with virus-specific primers and Sanger sequencing further confirmed the presence of these viruses. Inoculation experiments showed that HLFPV could be mechanically transmitted to
Nicotiana benthamiana
and
N. tabacum
, while HLHV could only be mechanically transmitted to
N. benthamiana.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-022-05634-0</identifier><identifier>PMID: 36609629</identifier><language>eng</language><publisher>Vienna: Springer Vienna</publisher><subject>Agricultural research ; Annotated Sequence Record ; Biomedical and Life Sciences ; Biomedicine ; Flowers & plants ; Genome, Viral ; Genomes ; Hawaii ; Hibiscus ; Hibiscus rosa-sinensis ; Infectious Diseases ; Inoculation ; Medical Microbiology ; Next-generation sequencing ; Nucleotide sequence ; Phylogenetics ; Phylogeny ; Plant viruses ; Proteins ; RNA polymerase ; Rosa ; Tobacco ; Tobamovirus - genetics ; Viral infections ; Virology ; Viruses</subject><ispartof>Archives of virology, 2023-02, Vol.168 (2), p.40-40, Article 40</ispartof><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature 2022. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-742576d24561fdbda8ea31a0fef7e0483d7d6e4e88e9b5abcd67d75d99d77e323</citedby><cites>FETCH-LOGICAL-c375t-742576d24561fdbda8ea31a0fef7e0483d7d6e4e88e9b5abcd67d75d99d77e323</cites><orcidid>0000-0003-3003-4140</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36609629$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wang, Xupeng</creatorcontrib><creatorcontrib>Larrea-Sarmiento, Adriana</creatorcontrib><creatorcontrib>Olmedo-Velarde, Alejandro</creatorcontrib><creatorcontrib>Kong, Alexandra</creatorcontrib><creatorcontrib>Borth, Wayne</creatorcontrib><creatorcontrib>Suzuki, Jon Y.</creatorcontrib><creatorcontrib>Wall, Marisa M.</creatorcontrib><creatorcontrib>Melzer, Michael</creatorcontrib><creatorcontrib>Hu, John</creatorcontrib><title>First detection and complete genome sequence of a new tobamovirus naturally infecting Hibiscus rosa-sinensis in Hawaii</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>High-throughput sequencing was used to analyze
Hibiscus rosa-sinensis
(family Malvaceae) plants with virus-like symptoms in Hawaii. Bioinformatic and phylogenetic analysis revealed the presence of two tobamoviruses, hibiscus latent Fort Pierce virus (HLFPV) and a new tobamovirus with the proposed name "hibiscus latent Hawaii virus" (HLHV). This is the first report of the complete sequence, genome organization, and phylogenetic characterization of a tobamovirus infecting hibiscus in Hawaii. RT-PCR with virus-specific primers and Sanger sequencing further confirmed the presence of these viruses. Inoculation experiments showed that HLFPV could be mechanically transmitted to
Nicotiana benthamiana
and
N. tabacum
, while HLHV could only be mechanically transmitted to
N. benthamiana.</description><subject>Agricultural research</subject><subject>Annotated Sequence Record</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Flowers & plants</subject><subject>Genome, Viral</subject><subject>Genomes</subject><subject>Hawaii</subject><subject>Hibiscus</subject><subject>Hibiscus rosa-sinensis</subject><subject>Infectious Diseases</subject><subject>Inoculation</subject><subject>Medical Microbiology</subject><subject>Next-generation sequencing</subject><subject>Nucleotide sequence</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Plant viruses</subject><subject>Proteins</subject><subject>RNA polymerase</subject><subject>Rosa</subject><subject>Tobacco</subject><subject>Tobamovirus - genetics</subject><subject>Viral infections</subject><subject>Virology</subject><subject>Viruses</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><recordid>eNp9kU1rHDEMhk1paTZp_0APxdBLL25le8b2HENIuoVAL-3ZeMaaxWHG3tgzCfn3cbL5gBx6kUB69EriJeQLhx8cQP8sNUDLQAgGrZINg3dkwxspmNGdeU82IKFhRoE5IselXAHUgmw_kiOpFHRKdBtycxFyWajHBYclpEhd9HRI836qFbrDmGakBa9XjAPSNFJHI97SJfVuTjchr4VGt6zZTdMdDXF8UIk7ug19KENt5lQcKyFiLKFUgG7drQvhE_kwuqng56d8Qv5dnP8927LLP79-n51eskHqdmG6Ea1WXjSt4qPvvTPoJHcw4qgRGiO99gobNAa7vnX94JX2uvVd57VGKeQJ-X7Q3edUfyiLnetdOE0uYlqLFVrxziiuZUW_vUGv0ppjve6RUo1QmldKHKihflYyjnafw-zyneVgH1yxB1dsdcU-umKhDn19kl77Gf3LyLMNFZAHoNRW3GF-3f0f2XsK8pmF</recordid><startdate>20230201</startdate><enddate>20230201</enddate><creator>Wang, Xupeng</creator><creator>Larrea-Sarmiento, Adriana</creator><creator>Olmedo-Velarde, Alejandro</creator><creator>Kong, Alexandra</creator><creator>Borth, Wayne</creator><creator>Suzuki, Jon Y.</creator><creator>Wall, Marisa M.</creator><creator>Melzer, Michael</creator><creator>Hu, John</creator><general>Springer Vienna</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-3003-4140</orcidid></search><sort><creationdate>20230201</creationdate><title>First detection and complete genome sequence of a new tobamovirus naturally infecting Hibiscus rosa-sinensis in Hawaii</title><author>Wang, Xupeng ; Larrea-Sarmiento, Adriana ; Olmedo-Velarde, Alejandro ; Kong, Alexandra ; Borth, Wayne ; Suzuki, Jon Y. ; Wall, Marisa M. ; Melzer, Michael ; Hu, John</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-742576d24561fdbda8ea31a0fef7e0483d7d6e4e88e9b5abcd67d75d99d77e323</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Agricultural research</topic><topic>Annotated Sequence Record</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Flowers & plants</topic><topic>Genome, Viral</topic><topic>Genomes</topic><topic>Hawaii</topic><topic>Hibiscus</topic><topic>Hibiscus rosa-sinensis</topic><topic>Infectious Diseases</topic><topic>Inoculation</topic><topic>Medical Microbiology</topic><topic>Next-generation sequencing</topic><topic>Nucleotide sequence</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Plant viruses</topic><topic>Proteins</topic><topic>RNA polymerase</topic><topic>Rosa</topic><topic>Tobacco</topic><topic>Tobamovirus - 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Hibiscus rosa-sinensis
(family Malvaceae) plants with virus-like symptoms in Hawaii. Bioinformatic and phylogenetic analysis revealed the presence of two tobamoviruses, hibiscus latent Fort Pierce virus (HLFPV) and a new tobamovirus with the proposed name "hibiscus latent Hawaii virus" (HLHV). This is the first report of the complete sequence, genome organization, and phylogenetic characterization of a tobamovirus infecting hibiscus in Hawaii. RT-PCR with virus-specific primers and Sanger sequencing further confirmed the presence of these viruses. Inoculation experiments showed that HLFPV could be mechanically transmitted to
Nicotiana benthamiana
and
N. tabacum
, while HLHV could only be mechanically transmitted to
N. benthamiana.</abstract><cop>Vienna</cop><pub>Springer Vienna</pub><pmid>36609629</pmid><doi>10.1007/s00705-022-05634-0</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0003-3003-4140</orcidid></addata></record> |
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| ispartof | Archives of virology, 2023-02, Vol.168 (2), p.40-40, Article 40 |
| issn | 0304-8608 1432-8798 |
| language | eng |
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| source | Springer Nature |
| subjects | Agricultural research Annotated Sequence Record Biomedical and Life Sciences Biomedicine Flowers & plants Genome, Viral Genomes Hawaii Hibiscus Hibiscus rosa-sinensis Infectious Diseases Inoculation Medical Microbiology Next-generation sequencing Nucleotide sequence Phylogenetics Phylogeny Plant viruses Proteins RNA polymerase Rosa Tobacco Tobamovirus - genetics Viral infections Virology Viruses |
| title | First detection and complete genome sequence of a new tobamovirus naturally infecting Hibiscus rosa-sinensis in Hawaii |
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