Decoding the mechanism of earthworm extract against wounds: an integrated metabolomics and network pharmacology study

• Published in: Molecular diversity 2024-04, Vol.28 (2), p.631-647
• Main Authors: Wang, Dong, Ruan, Zhen, Wang, Ruihui, Ma, Li, Tang, Saiqing, Wang, Xuejing, Ma, Axue
• Format: Article
• Language: English
• Subjects: Animals; Biochemistry; Biomedical and Life Sciences; Life Sciences; Metabolites; Metabolomics - methods; Molecular Docking Simulation; Network Pharmacology; Oligochaeta - metabolism; Organic Chemistry; Original Article; Pharmacy; Polymer Sciences; Signal Transduction - drug effects; Worms; Wound healing; Wound Healing - drug effects
• ISSN: 1381-1991; 1573-501X
• DOI: 10.1007/s11030-023-10609-7

Earthworms are used to cure wounds in Chinese villages for thousands of years. Recently, scientists realized their extracts could promote wound healing and they have anti-inflammatory, antioxidant, anti-apoptosis, and anti-microbial properties, but its mechanism of promoting wound healing remains unclear. In the presented study, electronic literature databases and LC-MS/MS were used to determine earthworms’ ingredients and differential metabolites. Swiss Target Prediction database was used for ingredients’ target prediction and wound disease-relevant genes were found from GeneCards, OMIM, and DrugBank databases. Network pharmacology was conducted to demonstrate filtering hub targets, biological functions, and the signaling pathways of earthworms extract against wounds. Molecular docking and metabolism analysis were used to look for core target genes and key bioactive molecules from earthworms. Finally, the investigation shows 5 most important signal pathways, 5 core genes, and 6 bioactive ingredients-related cell–cell adhesion, cell proliferation, and cell migration processes could be affected by earthworms’ extract. On 3rd day, the extract could regulate HIF1A and EGFR targets to make the differences of quantities of 4-pyridoxate, tetradecanoic acid, and L-kynurenine. While on 7th day, the regulation refers 6 earthworms’ bioactive ingredients, 4 core genes (CTNNB1, EGFR, SRC, and CASP3), and 4 differential metabolites (4-hydoxy-2-quinolinecarboxylic acid, urocanate, deoxyinosine, creatine, and sn-glycerol-3-phosphocholine). on 14th day, 2 core genes (EGFR, SRC) are influenced in the biological processes. Briefly, we found that 6 ingredients from earthworms have most bioactive and 5 core genes play an important role in promoting wound-healing processes. These discovers indicates earthworms could against wound via AGE-RAGE, PI3K-Akt, HIF1A, MAPK, and Axon guidance pathways. Graphical abstract