A multi-centre retrospective study of Nocardia speciation and antimicrobial susceptibility in Queensland, Australia

• Published in: European journal of clinical microbiology & infectious diseases 2023-03, Vol.42 (3), p.339-345
• Main Authors: Sim, B. Z., Aaron, L., Coulter, C., Parkes-Smith, J., Badrick, T., May, K., Armstrong, M., Hendry, S., Sundac, L., Dang, L., Ho, J., Hanson, J., Smith, S., Choong, K., Henderson, A. H., Bursle, E.
• Format: Article
• Language: English
• Subjects: Adult; Anti-Bacterial Agents - pharmacology; Anti-Bacterial Agents - therapeutic use; Anti-Infective Agents - therapeutic use; Australia - epidemiology; Biomedical and Life Sciences; Biomedicine; Female; Humans; Internal Medicine; Male; Medical Microbiology; Microbial Sensitivity Tests; Nocardia; Nocardia Infections - drug therapy; Nocardia Infections - epidemiology; Nocardia Infections - microbiology; Original Article; Queensland - epidemiology; Retrospective Studies
• ISSN: 0934-9723; 1435-4373
• DOI: 10.1007/s10096-022-04542-0

The study aims to characterise the species identification and antimicrobial susceptibility testing (AST) results of Nocardial isolates from adult patients across major public hospitals in Queensland, Australia, over a 15-year period. A multi-centre retrospective observational study of Nocardia sp. isolates was conducted from 7 major public hospitals in Queensland, Australia, over a 15-year period. Clinical samples from patients aged ≥ 18 years that isolated Nocardia sp. were included. Demographic and clinical data were collected, along with species identification and AST results. Overall, 484 Nocardia sp. were isolated. Most patients were male (297, 61%) with a mean (IQR) age of 60 (51–75) and a median (IQR) Charlson Comorbidity Index of 4 (2–6). Of these, 239 (49%) patients were immunosuppressed. Organisms were most frequently isolated from sputum (174, 36%), and superficial swabs (102, 21%). Patients presented with pulmonary infections (165, 35%) and superficial skin and soft tissue infections (87, 18%) most commonly. One hundred (21%) isolates were deemed pulmonary colonisation and were not treated. Of the speciated organisms, N. nova complex was the most common (93, 19%), followed by N. farcinica complex (79, 16%). Organisms were reliably susceptible to linezolid (240/245, 98%), amikacin (455/470, 97%), and trimethoprim/sulfamethoxazole (459/476, 96%), but less so to imipenem (243/472, 51%) and ceftriaxone (261/448, 58%). This is the largest Australian description of Nocardia sp. to date. Given antimicrobials are often commenced prior to AST results and sometimes even speciation, characterisation of local species and antibiogram data is important to guide empiric choices and local guidelines.