An efficient, fast and inexpensive method for genomic DNA extraction of fish tissue

• Published in: Molecular biology reports 2023-04, Vol.50 (4), p.3963-3968
• Main Authors: AL-Thuwaini, Tahreer M., Mosia, Iman A., Algboory, Hussein L., Al-Shuhaib, Mohammed Baqur S.
• Format: Article
• Language: English
• Subjects: Animal Anatomy; Animal Biochemistry; Animals; Biomedical and Life Sciences; Deoxyribonucleic acid; DNA; DNA - genetics; Enzymes; Gel electrophoresis; Genome - genetics; Genomics; Histology; Life Sciences; Morphology; Poaceae; Polymerase chain reaction; Polymerase Chain Reaction - methods; Short Communication
• ISSN: 0301-4851; 1573-4978
• DOI: 10.1007/s11033-023-08317-4

Background DNA extraction is an essential step for many genetic techniques like PCR and other molecular analyses. Based on the method of extraction and type of tissue used, the quality of extracted DNA for genetic studies varies. An appropriate extraction method is evaluated by the high concentration and purity of DNA. Thus, this study aimed to find a more efficient and effective method of DNA extraction from fish tissues and compare it to commercially available kits. Methods and results A total of 200 fish tissue samples were extracted using each method and then validated with restriction enzymes and PCR amplification. The result revealed that the mean quantity of the isolated genomic DNA, when measured by Nanodrop for grass and common carp, was estimated at (624.41 ± 34.51) µg/ml and (651.27 ± 46.31) µg/ml, respectively, and the purity of this DNA was about (1.83 ± 0.04) and (1.88 ± 0.03) respectively, as compared to commercial extraction kits. Furthermore, gel electrophoresis was performed on the PCR-ready DNA, and the results were confirmed with restriction enzymes and PCR amplification. Based on results obtained from restriction enzymes and PCR analysis, it was determined that no significant inhibitors existed for the enzymes that were used in molecular biology reactions. Conclusion As a result, this technique provides an efficient and versatile alternative to the traditional method for obtaining bulk amounts of highly qualified DNA from fish tissue and can be easily used for subsequent analyses such as PCR and several molecular experiments on other fish species.