A universal ratiometric method for Micro-RNA detection based on the ratio of electrochemical/electrochemiluminescence signal, and toehold-mediated strand displacement amplification

• Published in: Analytica chimica acta 2023-05, Vol.1257, p.341119-341119, Article 341119
• Main Authors: Niazi, Mohammad, Azizi, Ava, Khajavi, Zeynab, Sheikh, Milad, Taheri, Salman, Radfar, Sasan, Alizadeh, Abdolhamid, Ghanbari, Reza
• Format: Article
• Language: English
• Subjects: Biosensing Techniques - methods; DNA - chemistry; Electrochemical Techniques - methods; Gold - chemistry; Limit of Detection; Luminescent Measurements - methods; Metal Nanoparticles - chemistry; Methylene Blue; MicroRNAs - chemistry; Photometry
• ISSN: 0003-2670; 1873-4324
• DOI: 10.1016/j.aca.2023.341119

An ultra-selective and reproductive ratiometric platform was introduced based on the ratio of Ru(phen)32+ electrochemiluminescence (ECL) signal and methylene blue (MB) electrochemistry (EC) signal, which was amplified using a specific and efficient toehold-mediated strand displacement (TMSD). The stable DNA nanoclews (NCs) were efficiently loaded with MB (MB-NCs) as EC signal tags after being synthesized utilizing a simple rolling circle amplification reaction. Besides, Ti3C2-based nanocomposite could apply as a superb carrier for both Ru(phen)32+ and gold nanoparticles (Ti3C2–Au–Ru), resulting in a nearly constant ECL internal reference to eliminate the possible interferences. The Ti3C2–Au–Ru was attached to the surface of the electrode using Nafion, which exhibited excellent conductivity, and hairpin DNAs (hDNAs) were fixed on AuNPs via an Au–S bond. The designed biosensor was finally applied for miRNA-18a detection as a target model. The TMSD method made it possible to concurrently convert and amplify a single miRNA-18ainput into a large amount of output DNAs with high selectivity. These output DNAs were designed to unfold the stem-locked area of hDNAs. The opened hDNAs then hybridized with the MB-NCs to produce an EC signal. In the proposed biosensing system, by raising the target concentration of miRNA, the EC signal gradually rose, the ECL signal remained nearly constant, and the ratiometric detection method markedly promoted biosensor accuracy. Linear correlations of the ratio value of the EC/ECL with miRNA-18a concentrations between 20 aM and 50 pMwere observed, with the limit of detection of 9 aM. The biosensor was applied to detect miRNA-18a in real serum samples with satisfactory results. [Display omitted] •An ultra-sensitive and reliable ratiometric biosensor has been developed.•A great accuracy was obtained via applying Ti3C2–Au–Ru as a steady internal reference ECL signal.•The selective TMSD method was utilized to distinguish the target sequences from the similar miRNAs.•High sensitivity was achieved by the high loaded capacity of NCs with MB.•The biosensor was applied to detect miRNA-18a in real serum samples with satisfactory results.